Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00837 ATGGACTCCTCTAAGAAACTTGTATTCTCGGAACCCTTTATGTCTCAGAGGAGGAAGGTGATTTCTGGGTTCAGTTTAGGTGTTGGGGTTTCTCTCGTTTTCTTCACTCTTCTCCTGCTCAACAACACTTCCCTCACCGCTCCCAAAGTTCAAGCCTTTCTGCAAGGATCTGATTCCAACTCTTCCTTTTCTTGGCATTTTCCCTTCACGACTCGTTCTCTCAACGGTTCCGTCAGTTTGCTGCATAGGGCTGAAGTGAACGTGTCAGGGGAGCGTTTGGGGAAAACCCTTGTGGGGAATCAGAAAAACGAAAGCTTGCATTTTGGAGCGGAGGAAGAGCATTCTAGTTCTGTGAAGGATGTTAGTTTTCTCGGGGAGGGACATGCGCACGTGGGAAATTCGTCATGCAGTGGTGGTGGTGGAGATGGAAAGTGTGGAGAGGGGTTGGTTAAGGAAAGTGGTAATTTTAGTGTTGGTAGTTTCCGTGGGGAGtgtgacatctttgatgggaaatgggtgagggatgagtcgaagccgtactatcccttggggtcttgtccccacatcgatagggattttgattgtcatcttaatgggaggcctgatagtgagtatgtgaagtggaaatggcaaccaaatgggtgtgacattccaagtttgaatgcaactgattttctggaaaagttgcgaggacagaagctggtttttgtgggggattcactgaacaggaacatgtgggaatccctggtgtgtatcctacgtcaaagtgtcaaggacaagaaacgtgtttttgaaatttcaggaaaaacagaatttaagaagaaagatgtctatgcttttagatttgagGATTATAATTGTTCAGTAGATTTTGTTAGTTCACCATTCATTGTTCAAGAGTCAACTTTCAAAGGCATAAATGGGTCCTTTGAGACATTAAGATTGGATTTGATGGACCAGACAGCTACCACCTATCATGATGCTGATATCATAGTCTTCAATACAGGTCATTGGTGGACCCACGAGAAAACATCTAGGGGAGAATATTATTATCAAGAAGGCAACCATGTATACCCCAGACTCAAAGTTCTGGATGCATATACAAGGGCATTGGCCACTTGGGCTAAATGGATCGACAATAATATTGATGTCAATCGAACTCAGGTTTTCTTCAGAGGATACTCAGTAACCCATTTTAGGTATTGGTCTTTTACATGGCTTCCTAATTTTAGTTCGGACTTGCTTCCCTTTCATTGGCTCTAA 1263 0.3151 MDSSKKLVFSEPFMSQRRKVISGFSLGVGVSLVFFTLLLLNNTSLTAPKVQAFLQGSDSNSSFSWHFPFTTRSLNGSVSLLHRAEVNVSGERLGKTLVGNQKNESLHFGAEEEHSSSVKDVSFLGEGHAHVGNSSCSGGGGDGKCGEGLVKESGNFSVGSFRGECDIFDGKWVRDESKPYYPLGSCPHIDRDFDCHLNGRPDSEYVKWKWQPNGCDIPSLNATDFLEKLRGQKLVFVGDSLNRNMWESLVCILRQSVKDKKRVFEISGKTEFKKKDVYAFRFEDYNCSVDFVSSPFIVQESTFKGINGSFETLRLDLMDQTATTYHDADIIVFNTGHWWTHEKTSRGEYYYQEGNHVYPRLKVLDAYTRALATWAKWIDNNIDVNRTQVFFRGYSVTHFRYWSFTWLPNFSSDLLPFHWL 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00837 420 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 11 400 IPR029962 GO:0016413
Cca06g00837 420 Pfam PMR5 N terminal Domain 164 216 IPR025846 -
Cca06g00837 420 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 217 400 IPR026057 GO:0016740
Cca06g00837 420 PANTHER PMR5/CAS1P GDSL/SGNH-LIKE ACYL-ESTERASE FAMILY PROTEIN 11 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00837 Cca-Chr6 21470394 21475220 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00837 - - gmx:100804622 630.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00837 06 21470394 21475220 Cca06g00837 06 21470394 21475220 ECH
Cca06g00837 06 21470394 21475220 Cca11g00695 11 11776240 11779742 PCT
Cca11g01748 11 42110640 42114984 Cca06g00837 06 21470394 21475220 PCT