Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01748 ATGGAAGCTGTGAGTGGAAGCAGTGTTTGCGTGACATCCTCTCTTGCGCCACGCTCACCAACACTACCCAAGTCCACCGTGTCTCTGCTACGCGCCTCTCACCAACACCTCACAGCATTTCCTTCACAATCCCATCTCTTCTCCTACCACTCTCCACCCTATGCTAAAACCCTCCGTGCCAGAACCGCTTCCAAACCCGCCATTTTCCTTCCCCACTTAATCGCTTCTCTGGAACAAGTTGACCAGACTTACATAATGGTGAAGCCTGACGGCGTGCAACGCGGCCTCGTGGGAGAAATTATTTCTAGGTTTGAGAAGAAGGGGTTTAAGTTAACTGGCTTGAAGCTCTTCCAGTGCTCAAAAGAATTGGCTGAGGAGCATTACAAGGACCTAAAACAAAAATCATTCTTCCCCAAGCTTATTGACTATATTACTTCAGGTCCTGTTGTGTGTATGGCTTGGGAGGGTGTTGGAGTAGTGGCATCAGCACGGAAGCTTATAGGGGCTACAGATCCTCTTCAAGCTGAACCAGGCACAATAAGAGGAGACCTTGCTGTCCAAACTGGAAGGAATGTTGTTCATGGCAGTGACAGCCCTGATAATGGCAAGCGGGAAATAGCTCTATGGTTCAAGGAAGGCGAATTATGCGAATGGACTCCTGTCCAAGCACCATGGATCAGAGAATAG 687 0.4891 MEAVSGSSVCVTSSLAPRSPTLPKSTVSLLRASHQHLTAFPSQSHLFSYHSPPYAKTLRARTASKPAIFLPHLIASLEQVDQTYIMVKPDGVQRGLVGEIISRFEKKGFKLTGLKLFQCSKELAEEHYKDLKQKSFFPKLIDYITSGPVVCMAWEGVGVVASARKLIGATDPLQAEPGTIRGDLAVQTGRNVVHGSDSPDNGKREIALWFKEGELCEWTPVQAPWIRE 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01748 228 Hamap Nucleoside diphosphate kinase [ndk]. 80 215 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Cca11g01748 228 SUPERFAMILY Nucleoside diphosphate kinase, NDK 81 226 IPR036850 -
Cca11g01748 228 ProSitePatterns Nucleoside diphosphate kinases active site. 191 199 IPR023005 -
Cca11g01748 228 Pfam Nucleoside diphosphate kinase 82 214 IPR034907 -
Cca11g01748 228 SMART ndk_5 80 217 IPR034907 -
Cca11g01748 228 CDD NDPk_I 82 210 - -
Cca11g01748 228 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 4 227 - -
Cca11g01748 228 Gene3D - 76 228 IPR036850 -
Cca11g01748 228 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 4 227 - -
Cca11g01748 228 PRINTS Nucleoside diphosphate kinase signature 83 105 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Cca11g01748 228 PRINTS Nucleoside diphosphate kinase signature 127 146 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Cca11g01748 228 PRINTS Nucleoside diphosphate kinase signature 147 164 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Cca11g01748 228 PRINTS Nucleoside diphosphate kinase signature 168 184 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Cca11g01748 228 PRINTS Nucleoside diphosphate kinase signature 191 210 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01748 Cca-Chr11 42110640 42114984 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01748 K00940 - gmx:100500478 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01748 11 42110640 42114984 Cca11g01748 11 42110640 42114984 ECH
Cca11g01748 11 42110640 42114984 Cca06g00837 06 21470394 21475220 PCT