Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g02063 ATGACAATGCAAAACTCTCTCCAAATAACTACAGGTGGTACTCGCGGTTACGATGATGATGGACGTGCCAAGAGGACTGGAACTTTATGGAGTGCTGTGGCTCATATCATTACAGCTATTATTGGTGCTGGTGTTCTGTCTCTGGCATGGAGCACTTCCCAATTGGGATGGATTGCAGCACCACTTTTCTTGGTTTTTTGTGCAATTGTCACCTATATTTCTTCATTCCTCCTTTCTGATTGTTACAGAACTCTGGATCCTGTAACTGGGAAAAGAAACTGCTCTTACATTGAAGCTGTTAGAATCTATCTTGGCAATAAAAGAACATGGTTGGCTGGTTTCCTTCAATATTTGAGCTTGTATGGAGTTAGTATTGCTTACATAATTACCACAGCACAATGTTTGAGAGCGATACTGAAATCAAATTGTTATCACAAGGAAGGACATCAGGCTCCTTGTAAATATGGAGATACAATATATATGGTGCTGTTTGGACTAATTCAGGTCATAATGTCATTCATACCAGATCTTCACACCATGGCATGGCTTTCAGTTGTTGCTGCCATAATGTCCTTTACATACTCATTCATTGGACTTGGACTTGGCATCGCAACAGTAGTGGAAAATGGAACAATTAAGGGGAGATTAACAGGAGTACCAACTTCAAATATTGTTGACAAATTCTGGTTAGTCTTCCAAGCAGTTGGTGATATTGCCTTTGCCTATCCATACACGGTCATCCTCTTGGAGATACAGGACACTCTAGAGTCTCCTCCACCAGAAAACAAGACCATGAAAAAGGCCTCCTTGATCGCTCTCCTCATTACAACATTCTTCTACCTCTGCTGTGGATGCTTTGGATATGCAGCTTTTGGAAATCAAACACCAGGGAACCTCTTGACAGGATTTGGCTTTTACGAGCCCTATTGGCTCGTTGACTTTGCTAATGCTTGCATTGTTCTTCATCTGGTAGGAGGATATCAGGTTTACTGTCAGCCGATATATGGTGCTGTTGATCGATGGTGTTCAAAAAAATACTCCAACATTGGCTTTGTGAATAATTTCTATCAATTGAAACTGCCTTGTTTGCCAGCTTTTCAGATAAACATGTTCAGGATATGTTTTCGAACAGCCTATGTGGTTTCCACTACTGGAGTTGCTATACTGTTTCCATACTTCAATCAACTTCTAGGAGTGTTAGGAGCCTTAGGCTTTTGGCCATTGGTTATATATTTCCCGATAGAGATGTACTTTGTGCAGAGGAAAATTGAAGCTTGGTCTAGAAAATGGATTGTTCTTAGGACCTTAAGCTTTATTTGCTTTATTGTGTCGGTACTGGCTCTCATTGCATCATTTGAAGGAATCATAAGAGAGAAACTAAGCTAA 1386 0.4048 MTMQNSLQITTGGTRGYDDDGRAKRTGTLWSAVAHIITAIIGAGVLSLAWSTSQLGWIAAPLFLVFCAIVTYISSFLLSDCYRTLDPVTGKRNCSYIEAVRIYLGNKRTWLAGFLQYLSLYGVSIAYIITTAQCLRAILKSNCYHKEGHQAPCKYGDTIYMVLFGLIQVIMSFIPDLHTMAWLSVVAAIMSFTYSFIGLGLGIATVVENGTIKGRLTGVPTSNIVDKFWLVFQAVGDIAFAYPYTVILLEIQDTLESPPPENKTMKKASLIALLITTFFYLCCGCFGYAAFGNQTPGNLLTGFGFYEPYWLVDFANACIVLHLVGGYQVYCQPIYGAVDRWCSKKYSNIGFVNNFYQLKLPCLPAFQINMFRICFRTAYVVSTTGVAILFPYFNQLLGVLGALGFWPLVIYFPIEMYFVQRKIEAWSRKWIVLRTLSFICFIVSVLALIASFEGIIREKLS 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g02063 461 PANTHER TRANSMEMBRANE AMINO ACID TRANSPORTER FAMILY PROTEIN 5 460 - -
Cca05g02063 461 PANTHER OS05G0424000 PROTEIN-RELATED 5 460 - -
Cca05g02063 461 Pfam Transmembrane amino acid transporter protein 25 456 IPR013057 -
Cca05g02063 461 Gene3D Amino acid/polyamine transporter I 22 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g02063 Cca-Chr5 40388689 40391509 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g02063 5 458 Organic Solute Cotransporters AT1G10010 52.954 0.0 515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g02063 K24917 - gmx:100786621 848.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g02063 05 40388689 40391509 Cca05g02063 05 40388689 40391509 ECH
Cca01g00769 01 10159461 10164776 Cca05g02063 05 40388689 40391509 PCT
Cca05g02063 05 40388689 40391509 Cca01g00770 01 10177488 10179920 PCT