Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01897 ATGGGTGTCCTTGGAACAATGGCAAGACATTTGGACACAATAATAGGGCCTGGAGTGATGCTTCTTTATCCTCTGTACGCATCAATGAGGGCGATTGAAAGTCCTTCAACCTTAGATGATCAACAGTGGCTAACGTATTGGGTTTTATACTCCTTCATAACCCTCTTTGAGCTTTCCACTCATAGGATCCTATGTTGGTTTCCCATTTGGCCATACATGAAGCTTGTATTTTGCGCATGGCTGGTACTGCCAATGTTCAATGGAGCCGCATACATATATGAGAATTTTGTGAGGCAATACATAAAGAATATTGGAAGCTATGGAGGTTCCAATTATCCTGAGGAGTACAAGAAGGTCCTTCACATGATGACCTTGGATGCAAGGAAAGCAGTTGAACGCTATATTGATAGATATGGCGCTGATGCCTTTGAAAGAGTAATCAGAGTGGCTGAAAAAGAAGCAAAGAAGCACTGA 474 0.4219 MGVLGTMARHLDTIIGPGVMLLYPLYASMRAIESPSTLDDQQWLTYWVLYSFITLFELSTHRILCWFPIWPYMKLVFCAWLVLPMFNGAAYIYENFVRQYIKNIGSYGGSNYPEEYKKVLHMMTLDARKAVERYIDRYGADAFERVIRVAEKEAKKH 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01897 157 PANTHER HVA22-LIKE PROTEIN 3 155 - -
Cca05g01897 157 PANTHER HVA22-LIKE PROTEINS 3 155 IPR004345 -
Cca05g01897 157 Pfam TB2/DP1, HVA22 family 24 100 IPR004345 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01897 Cca-Chr5 38794364 38795720 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01897 K17279 - gmx:100779435 285.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g01009 09 30196641 30199269 Cca05g01897 05 38794364 38795720 PCT
Cca03g01277 03 30293583 30295291 Cca05g01897 05 38794364 38795720 PCT