Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01277 ATGGCCGAAGGAAGCGAAGCAGACCAAGACAAATCCATGAAGAAACTTCTCCTCATAGTAAACTGCGTTCTCCTCTGCATAGGAACCTCCGGCGGCCCCCTCATCATGCGCCTCTACTTCCTCCGCGGTGGCCACCGCGTCTGGCTCTCCAGCTTCCTCGAAACAGCCGGCTTCCCCGTCATGCTCCTCCCCCTCGCCGTCTCCTACTTccgccgccgccgcatcgccgccgccgcaggcgcatccgccAAACCAAGCCTCGTCTCCATGAAGCCCCCTCTCCTCCTCTTCTCCGCCGTCATCGGAATCCTCACCGGCCTCGACGACTACCTCTACGCCTACGGCGTCGCGCGCCTCCCGGTCTCCACCTCCGCCCTCATCATCGCCTCCCAGCTCGCCTTCACCGCGCTCTTCGCGTTCCTCCTCGTGAAGCAGAAGTTCACCGCGTATTCCGTCAACGCCGTTGTTTTGCTCACCGCCGGCGCCGGCGTGTTGGCCCTCCACACCAGCGGCGACCGCCCCGCCGGCGAGTCCACGAAGGATTACGTCATGGGGTTCCTCATGACCGTCGTCGCCGCCGCATTGTACGGCTTCGTTTTACCCTTGGTGGAGTGGGTCTACAAAAAAACCCAACAACCTATCACTTACTCTCTCGTTATGGAAATTCAGTTCGTTATGTGCTTCTTCGCCTCCCTCTTCTGCTTCATTGGGATGATTATAAACAAAGACTTTAAGGTGATTCCGAGGGAAGCTATGGAATCCGAACATGGAGAAGCAAATTATTATATAGTGTTGGTGGGGAATGCTATAGTATGGCAAGCATTTTTCTTAGGAGCCATTGGGGTTATATTTTGTGGGTCGTCTTTGTTGTCGGGTATTTTAATTGCGGTTTTGTTACCGGTAACCGAGGTTTTGGCGGTTATATTCTACAAAGAGAAGTTTCAAGCGGAGAAAGGGGTGTCTCTGTTCCTCTCGATTTGGGGCTTTGTGTCGTATTTCTATGGGGACATTAAACACGCGAGGGAAATGAAGAAGAAGAAGAAAAGTGAGATAGAAACAGTGTTGCCTCAGTATTCGTGA 1080 0.5102 MAEGSEADQDKSMKKLLLIVNCVLLCIGTSGGPLIMRLYFLRGGHRVWLSSFLETAGFPVMLLPLAVSYFRRRRIAAAAGASAKPSLVSMKPPLLLFSAVIGILTGLDDYLYAYGVARLPVSTSALIIASQLAFTALFAFLLVKQKFTAYSVNAVVLLTAGAGVLALHTSGDRPAGESTKDYVMGFLMTVVAAALYGFVLPLVEWVYKKTQQPITYSLVMEIQFVMCFFASLFCFIGMIINKDFKVIPREAMESEHGEANYYIVLVGNAIVWQAFFLGAIGVIFCGSSLLSGILIAVLLPVTEVLAVIFYKEKFQAEKGVSLFLSIWGFVSYFYGDIKHAREMKKKKKSEIETVLPQYS 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01277 359 PANTHER PURINE PERMEASE 2 7 350 - -
Cca03g01277 359 Pfam Purine nucleobase transmembrane transport 17 340 - -
Cca03g01277 359 PANTHER OS09G0467300 PROTEIN-RELATED 7 350 IPR030182 GO:0015211|GO:0016021
Cca03g01277 359 SUPERFAMILY Multidrug resistance efflux transporter EmrE 89 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01277 Cca-Chr3 30293583 30295291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01277 13 345 Organic Solute Cotransporters AT1G28220 58.859 9.17e-144 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01277 - - gmx:100803818 537.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01277 03 30293583 30295291 Cca03g01277 03 30293583 30295291 ECH
Cca05g01094 05 28007814 28009991 Cca03g01277 03 30293583 30295291 PCT
Cca03g01277 03 30293583 30295291 Cca05g01897 05 38794364 38795720 PCT