Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca05g01633 | ATGACTTGTCCTCTTCAACTCCACCGGTTCAACCCCGCATCCACCGCAGCCAGCTGTCCCAAGACGGCGCCGCCGCCAGCGCGCTGTTTCGCGGCCAAACCCACGACGGTCCCGGAGGCCGTGGCGCGGCAGCACGCGCAGGCGGTGGGGCCGAACCAGTGCTGCTCGGCCGTGATCCAATCGATCGCGGCGCCGGCTTCCGCCGTGTGGGCGGTGGTGCGGCGGTTCGACAGGCCGCAGGGGTACAAGCAGTTCGTGAAGAGCTGCCACGTGGTGGGCGAGGGCATTCGCGTGGGGGCGGTGCGCGAGGTGCGCGTGGTGTCGGGCCTCCCCGCGGCGTCGAGCACGGAGCGCCTGGAGATCCTGGACGAGGAGCGCCACGTGATGAGCTTCAGCGTGGTCGGCGGCGACCACCGCTTGAGAAACTACCGGTCGGTTACCACGCTCCACGGTGACGGCAACGGAGGGACAGTTGTCATCGAGTCTTACGTGGTTGACGTACCGCCCGGTAACACTAAGGAGGAGACTTGCGTTTTCGTGGACACCATCCTACGCTGCAATTTGCAGTCCCTCGCTCAGATCGCTGAAAACATGGCAACTCAACACTACTGA | 612 | 0.6552 | MTCPLQLHRFNPASTAASCPKTAPPPARCFAAKPTTVPEAVARQHAQAVGPNQCCSAVIQSIAAPASAVWAVVRRFDRPQGYKQFVKSCHVVGEGIRVGAVREVRVVSGLPAASSTERLEILDEERHVMSFSVVGGDHRLRNYRSVTTLHGDGNGGTVVIESYVVDVPPGNTKEETCVFVDTILRCNLQSLAQIAENMATQHY | 203 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca05g01633 | 203 | Gene3D | - | 15 | 203 | IPR023393 | - | |
| Cca05g01633 | 203 | PANTHER | POLYKETIDE CYCLASE/DEHYDRASE AND LIPID TRANSPORTER | 25 | 199 | - | - | |
| Cca05g01633 | 203 | SUPERFAMILY | Bet v1-like | 58 | 194 | - | - | |
| Cca05g01633 | 203 | CDD | PYR_PYL_RCAR_like | 54 | 196 | - | - | |
| Cca05g01633 | 203 | Pfam | Polyketide cyclase / dehydrase and lipid transport | 60 | 196 | IPR019587 | - | |
| Cca05g01633 | 203 | PANTHER | - | 25 | 199 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca05g01633 | Cca-Chr5 | 35749792 | 35751075 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca05g01633 | K14496 | - | gmx:100804400 | 303.523 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca05g01633 | 05 | 35749792 | 35751075 | Cca01g01941 | 01 | 45314730 | 45317712 | ECH | |
| Cca07g01660 | 07 | 42053176 | 42053721 | Cca05g01633 | 05 | 35749792 | 35751075 | ECH | |
| Cca01g01941 | 01 | 45314730 | 45317712 | Cca05g01633 | 05 | 35749792 | 35751075 | ECH | |
| Cca05g01633 | 05 | 35749792 | 35751075 | Cca05g01633 | 05 | 35749792 | 35751075 | ECH | |
| Cca01g00256 | 01 | 2657395 | 2658727 | Cca05g01633 | 05 | 35749792 | 35751075 | PCT |