Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00256 ATGCCTTCTTCTCTTCAGTTGGATAGGTTCAATCCTATCACCCACGCCGCCACCACCGCCATAGCCAACGGCGTAAACTGCCCCAAGCAGCCTCAAGCGCCACCTCCCTCGGTGGCGCGTCGCCTCGTGCTGCCCCTCGCGGTCTCCGACGCGGCGGCGCGCCACCACGCGCACGTTGTGGCACCGAACCAGTGCTGCTCCGTGGTGACGCAGCACGTCGACGCCCCCGTGGCCGCCGTGTGGGCGGTGGTGCGGCGCTTCGACCACCCGCAGGGCTACAAGAACTTCGTGAAGAGCTGCCACGTCATCACCGGCGACGGCATTTGCGTGGGCGCCGTCCGCGAGGTGCGCGTGGTGTCGGGGCTCCCCGCCGAGTCGAGCACCGAGCGCCTCGAGATCCTCGACGACGAGCGGCACGTCATCAGCTTCAGCGTCGTCGGCGGCGACCACCGCCTCAGGAACTACCGGTCGGTGACGACGCTCCACGCTTCCGGGAATGGGACACGTGTCGTGGAGTCGTACGTCGTTGACGTACCGCAGGGTAACACTAAGGAGGAAACGTGCGTGTTTGTGGACACCATCGTACGTTGTAACTTGCAGTCTCTGGCTCAGATCGCTGAGAACAGGATCCGAAGTTGTGAACATGAAAACTCTGGACAACAACACTGTTAA 672 0.6354 MPSSLQLDRFNPITHAATTAIANGVNCPKQPQAPPPSVARRLVLPLAVSDAAARHHAHVVAPNQCCSVVTQHVDAPVAAVWAVVRRFDHPQGYKNFVKSCHVITGDGICVGAVREVRVVSGLPAESSTERLEILDDERHVISFSVVGGDHRLRNYRSVTTLHASGNGTRVVESYVVDVPQGNTKEETCVFVDTIVRCNLQSLAQIAENRIRSCEHENSGQQHC 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00256 223 Pfam Polyketide cyclase / dehydrase and lipid transport 65 207 IPR019587 -
Cca01g00256 223 Gene3D - 44 221 IPR023393 -
Cca01g00256 223 PANTHER - 31 217 - -
Cca01g00256 223 CDD PYR_PYL_RCAR_like 85 207 - -
Cca01g00256 223 SUPERFAMILY Bet v1-like 64 206 - -
Cca01g00256 223 PANTHER POLYKETIDE CYCLASE/DEHYDRASE AND LIPID TRANSPORTER 31 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00256 Cca-Chr1 2657395 2658727 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00256 K14496 - gmx:100808416 362.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00256 01 2657395 2658727 Cca05g01633 05 35749792 35751075 PCT