Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01660 ATGCCACCACTCCCTCCTCCTCCGGCCACCGCCGTCCCCGACGCCGTGGCCCGGCACCACACGCACGCGGTGGCCCCCCACCAGTGCTGCTCCGCCGTGGTCCAGGAGATCGCCGCCCCCGTCTCCACCGTGTGGTCGGTGGTGCGGCGGTTCGACAACCCGCAGGCCTACAAGCACTTCGTGAAGAGCTGCCACGTCATCCTGGGCGACGGCGACGTCGGGACCCTCCGCGAGGTCCGCGTGATCTCCGGCCTCCCCGCCGCCGTCAGCACGGAGCGCCTCGACGTCCTGGACGACGAGCGCCACGTGATCGGCTTCAGCATGGTCGGCGGCGACCACCGCCTCTCCAACTACCGGTCCGTCACGACCCTCCACCCCCACCGCGCCGGCACCGTCGTGGTTGAGTCCTACGTGGTCGACGTCCCCCCCGGCAACACCACCGACGACACGCGCCTCTTCGTCGACACCATCCTCCGCTGCAACCTCCAATCCCTCGCCAAATTCGCCGAAAACCTCTCCAGACCCAAACTCCATCAACAACGATAA 546 0.6868 MPPLPPPPATAVPDAVARHHTHAVAPHQCCSAVVQEIAAPVSTVWSVVRRFDNPQAYKHFVKSCHVILGDGDVGTLREVRVISGLPAAVSTERLDVLDDERHVIGFSMVGGDHRLSNYRSVTTLHPHRAGTVVVESYVVDVPPGNTTDDTRLFVDTILRCNLQSLAKFAENLSRPKLHQQR 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01660 181 Pfam Polyketide cyclase / dehydrase and lipid transport 31 167 IPR019587 -
Cca07g01660 181 PANTHER - 9 179 - -
Cca07g01660 181 SUPERFAMILY Bet v1-like 29 169 - -
Cca07g01660 181 CDD PYR_PYL_RCAR_like 29 170 - -
Cca07g01660 181 Gene3D - 4 180 IPR023393 -
Cca07g01660 181 PANTHER ABSCISIC ACID RECEPTOR 9 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01660 Cca-Chr7 42053176 42053721 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01660 K14496 - gmx:100805378 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01660 07 42053176 42053721 Cca05g01633 05 35749792 35751075 ECH
Cca07g01660 07 42053176 42053721 Cca01g01941 01 45314730 45317712 ECH
Cca07g01660 07 42053176 42053721 Cca07g01660 07 42053176 42053721 ECH