Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01560 ATGAAGGGTTCGAAGCGTTTGTTCACGATGGGACTAGTGTCGGCATGGTACTCCTCCAACATTGGGGTGCTGCTGCTGAACAAGTACCTGCTCAGCAACTACGGCTTCAAGTACCCCATTTTCCTCACCATGTGCCACATGACAGCCTGCTCCCTCTTCAGCTACGTCGCCATCGCCTGGCTCAAGATGGTTCCCATGCAGACCCTCCGCTCCCGCCTCCAGTTCCTCAAGATCGCCGCCCTCAGCCTCGTTTtctgcgtctccgtcgtcttcggcaacgtctctctccgctacctccccgtctccttcAACCAGGCCGTCGGCGCCACCACCCCCTTCTTCACCGCCGTCTTCGCTTACCTCATCACCTTCAAGAGGGAGGCCTGGCTCACCTACCTCGCCCTCCTCCCCGTCGTCACCGGCGTCGTCATTGCCAGCGGGGGTGAACCAAGCTTCCATTTATTTGGGTTCATAGTATGTGTTGCAGCTACAGCTGCACGAGCCTTAAAATCCGTGTTGCAAGGAATTTTGCTTTCTTCTGAAGGAGAGAAGCTGAATTCTATGAACCTTCTTCTTTACATGGCTCCGATGGCCGTTGTTTTTCTTCTTCCTGCTACACTTATAATGGAAGAAAATGTAGTTGGCATTACATTGGCTCTTGCCAGAGATGATGTGAAGATCATTTGGTATCTGCTATTTAATTCAGCACTCGCTTATTTTGTCAACCTGACCAATTTTTTGGTCACCAAACATACCAGTGCTCTTACCCTTCAGGTACTTGGGAATGCTAAAGGGGCTGTGGCAGTAGTAGTTTCAATTCTAATATTTAGAAACCCAGTTTCAGTCACTGGAATGATGGGTTATTCACTCACAGTCATTGGAGTTGTACTTTATAGTGAAGCCAAAAAGCGAAGCAAGTGA 921 0.4625 MKGSKRLFTMGLVSAWYSSNIGVLLLNKYLLSNYGFKYPIFLTMCHMTACSLFSYVAIAWLKMVPMQTLRSRLQFLKIAALSLVFCVSVVFGNVSLRYLPVSFNQAVGATTPFFTAVFAYLITFKREAWLTYLALLPVVTGVVIASGGEPSFHLFGFIVCVAATAARALKSVLQGILLSSEGEKLNSMNLLLYMAPMAVVFLLPATLIMEENVVGITLALARDDVKIIWYLLFNSALAYFVNLTNFLVTKHTSALTLQVLGNAKGAVAVVVSILIFRNPVSVTGMMGYSLTVIGVVLYSEAKKRSK 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01560 306 Pfam Triose-phosphate Transporter family 12 299 IPR004853 -
Cca05g01560 306 PANTHER - 1 305 - -
Cca05g01560 306 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 148 - -
Cca05g01560 306 SUPERFAMILY Multidrug resistance efflux transporter EmrE 197 300 - -
Cca05g01560 306 PANTHER SOLUTE CARRIER FAMILY 35 1 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01560 Cca-Chr5 34799037 34802972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01560 6 306 Organic Solute Cotransporters AT3G11320 91.362 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01560 - - gmx:100806704 577.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01560 05 34799037 34802972 Cca01g01804 01 42150319 42153888 ECH
Cca01g01804 01 42150319 42153888 Cca05g01560 05 34799037 34802972 ECH
Cca01g00743 01 9782081 9785184 Cca05g01560 05 34799037 34802972 ECH
Cca05g01560 05 34799037 34802972 Cca05g01560 05 34799037 34802972 ECH
Cca01g00337 01 3839507 3842904 Cca05g01560 05 34799037 34802972 PCT