Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01804 ATGACGACGAAGCACAGTATCCCGTGGTCAACGATCGGCGTGGTGATTGCGTGGTACACTTCCAACATCGGCGTCCTCCTTCTCAACAAGTACTTGCTCTCCAACTACGGCTTCAGCTTCCCCGTCTTCCTCACCACGTGTCACATGATGCTCTGCTCCGTTTTCAGCTACGTCATCTCCGTCACCGGCGTCGTTCCTCTCCAGACCCTGCGCTCCAGGAACCAGTTCGCCAAGGTCGTCGCGCTCAGCGTCGTTTTCTGCTTCTCCGTCGTCTGCGGGAACGTCTCGCTTAGGTACATTCCTGTCTCCTTTAACCAGGCCATCGGCGCCACCACCCCCTTCTTCACCGCCCTTTTCGCTTACGCCGTCACCGCCAAGAGGGAGGCCTGGCTCACTTACGCCACGCTTTTGCCTGTTGTTACGGGTGTCATAATTGCCAGTGGGGGTGAGCCAAGTTTTCATCTGTTTGGATTTGTAATCTGTGTTTCATCGACTGCTGCCAGAGCATTTAAATCAGTGCTTCAAGATATTTTGTTGTCTTCAGAGGGGGAAAAGTTGAATTCTATGAACCTGCTGCTTTATATGGCACCTATAGCTATGATGGTCTTACTTCCTGCAACATTGTTGATGGAGGGAAACGTGATTCGAATCACAACAGATCTTGCAAGAAAGGATATCAGAATTTTTTGGTATCTGCTTCTCAGTTCTTCTCTTGCATATTTTGTGAACCTGACTAATTTTTTGGTGACCAAACATACAAGTGCACTTACCCTTCAGGTTTTAGGAAATGCAAAGGGGGCAGTGGCTGTGGTGGTCTCAATTTTGATATTCAAAAACCCCATTTCAATGATAGGAATGCTTGGCTATGCACTCACTGTTGTTGGAGTTATATTGTACAGTGAAACCAAAAAGAGGTATAGCAGAAATTAG 930 0.4796 MTTKHSIPWSTIGVVIAWYTSNIGVLLLNKYLLSNYGFSFPVFLTTCHMMLCSVFSYVISVTGVVPLQTLRSRNQFAKVVALSVVFCFSVVCGNVSLRYIPVSFNQAIGATTPFFTALFAYAVTAKREAWLTYATLLPVVTGVIIASGGEPSFHLFGFVICVSSTAARAFKSVLQDILLSSEGEKLNSMNLLLYMAPIAMMVLLPATLLMEGNVIRITTDLARKDIRIFWYLLLSSSLAYFVNLTNFLVTKHTSALTLQVLGNAKGAVAVVVSILIFKNPISMIGMLGYALTVVGVILYSETKKRYSRN 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01804 309 Pfam Triose-phosphate Transporter family 14 300 IPR004853 -
Cca01g01804 309 PANTHER NUCLEOTIDE/SUGAR TRANSPORTER FAMILY PROTEIN 5 308 - -
Cca01g01804 309 SUPERFAMILY Multidrug resistance efflux transporter EmrE 198 300 - -
Cca01g01804 309 PANTHER SOLUTE CARRIER FAMILY 35 5 308 - -
Cca01g01804 309 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01804 Cca-Chr1 42150319 42153888 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g01804 11 305 Organic Solute Cotransporters AT3G11320 77.365 1.05e-167 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01804 - - gmx:100799632 550.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01560 05 34799037 34802972 Cca01g01804 01 42150319 42153888 ECH
Cca01g01804 01 42150319 42153888 Cca05g01560 05 34799037 34802972 ECH
Cca01g01804 01 42150319 42153888 Cca01g01804 01 42150319 42153888 ECH
Cca01g00743 01 9782081 9785184 Cca01g01804 01 42150319 42153888 ECH
Cca01g01804 01 42150319 42153888 Cca01g00743 01 9782081 9785184 ECH