Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01548 ATGGAGTCTTTATGCAACAAGGGTGAGCATTTTGAAAAGAAAAAAGATGGGTTTCCTCCTTCTGCTTCTGCCGGTAACGGAGCTAAGAACAAGTCTAGTGATCCAACTCAAGAAGCCAAAGGGTGTTCTTCTCCTCCTCTTGGTTGGCCTATTCGGAAGGCTGCACTCTCCAAATGCCGCAAGTCAGATGAAAAAGAAAATGAACCTATTTCTCATTTGGAAGATACAAAATTTACTAGCATCAGTTCAAAAATGTCAGGAATTGATGCGATGAAGGAAAGGTTTGCAAAATTACTACTTGGGGAAGATATGTCAGGATCTGGGAAGGGAGTGTGCAGTGCTCTGGCCATCTCAAATGCCATAACTAATCTGTGTGCCACTGTGTTTGGGCAATTATGGAGACTAGAACCTGTGCCTTGTGAAAAGAAAGCAATATGGCAGAGGGAAATGGAATGGCTTCTTAGTGTTAGTGATCACATTGTTGAGCTAATACCTTCTTGGCAAACATTTCCAGATGGAAGTAAGCTTGAGGTAATGACTTGCCGGCCAAGGTCAGATCTTTTTATGAATCTTCCTGCTCTGCGTAAACTCGACAACATGCTTCTTGAAATTTTAGATAGTTGCAAAGACATGGAGTTTTGGTATGTTGATCAAGGAATTGTAGCCCAAGATGCAGATGGTTCAGCTTCATTTTGCAAAAGAATTCAACGTCAAGAGGATAAGTGGTGGCTCCCTGTACCTCGTGTCCCCCTTTCTGGCCTCAGTGAGAACTCAAGAAAACAGTTGAATCACACAAGAGAATGTGCAAACCAAATACTAAAAGCTTCCATGGCTATCAACAATGGAGCTTTAGCTGAAATGGAAGTTCCTGAGTCATATTTGGAAACCCTTCCTAAGAATGGAAGAGCTTGCTTGGGGGATTTTATTTACCATTACATCACATCAGAGAAATTCTCTCCAGAGTGCTTGCTTGATTGCCTAGACCTCTCCTCTGAGCATGTTGCACTTGAGATTGCAAACCGTGTGGAAGCCTCAATATATGTGTGGCGTAGAAGAGGTCACTCTAGACCCCCACCTAATCCTAACCGTTCAACTGCAAAGTCATCGTGGGAAATTGTCAAGGACTTCATGGCTGATGGAGATAAGAGAGAACTACTAGCAGAAAGAGCTGAAAATGTTCTACTTTCACTGAAGCAACGGTTTCCGGGTCTAACTCAAACTACCTTGGATACTAGCAAGATCCAGTGCAACAAGGATGTAGGAAAATCCATATTGGAGAGTTACTCAAGAGTTTTGGAGAGCATGGCATTTAACATTGTAGCTCGCATAGATGATTTGCTATATGTGGATGACTTAACTAAACATTCAGATAGGTTTCCATTGGTTCCAATGTCAGTGTCTGTCTCAGGCACTCCTCACAAGGCAGTTGGCAAACCAAGCTTGTCACCTAAACCGCCACTAATTAGTCCTGCAAGGGGAGAGAGATCTCCTTTTCTCATCAACAACATCAACGTTAAACCTCTACGTCGCGGCTTTGGGGTGAGAAGAGTATTGTCAAATTATCTAGGGGCAGAATCCAAAGAAACAAAGACTTTAAGCAATTCAAGTGTGGTGAGTGGTTCAAACCCAAGCAGCAATAAAGCAGAACAGCCAGAACGCCAAAAGAAGTCACATGCCATGAATGGAAAGGCAAAATGA 1698 0.4276 MESLCNKGEHFEKKKDGFPPSASAGNGAKNKSSDPTQEAKGCSSPPLGWPIRKAALSKCRKSDEKENEPISHLEDTKFTSISSKMSGIDAMKERFAKLLLGEDMSGSGKGVCSALAISNAITNLCATVFGQLWRLEPVPCEKKAIWQREMEWLLSVSDHIVELIPSWQTFPDGSKLEVMTCRPRSDLFMNLPALRKLDNMLLEILDSCKDMEFWYVDQGIVAQDADGSASFCKRIQRQEDKWWLPVPRVPLSGLSENSRKQLNHTRECANQILKASMAINNGALAEMEVPESYLETLPKNGRACLGDFIYHYITSEKFSPECLLDCLDLSSEHVALEIANRVEASIYVWRRRGHSRPPPNPNRSTAKSSWEIVKDFMADGDKRELLAERAENVLLSLKQRFPGLTQTTLDTSKIQCNKDVGKSILESYSRVLESMAFNIVARIDDLLYVDDLTKHSDRFPLVPMSVSVSGTPHKAVGKPSLSPKPPLISPARGERSPFLINNINVKPLRRGFGVRRVLSNYLGAESKETKTLSNSSVVSGSNPSSNKAEQPERQKKSHAMNGKAK 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01548 565 MobiDBLite consensus disorder prediction 470 492 - -
Cca05g01548 565 ProSiteProfiles PRONE domain profile. 78 460 IPR005512 GO:0005085
Cca05g01548 565 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 31 536 IPR038937 GO:0005085
Cca05g01548 565 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 88 454 IPR005512 GO:0005085
Cca05g01548 565 Gene3D PRONE domain, subdomain 1 80 318 - -
Cca05g01548 565 Gene3D PRONE domain, subdomain 1 319 459 - -
Cca05g01548 565 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 5 31 536 - -
Cca05g01548 565 MobiDBLite consensus disorder prediction 25 40 - -
Cca05g01548 565 MobiDBLite consensus disorder prediction 527 565 - -
Cca05g01548 565 MobiDBLite consensus disorder prediction 1 17 - -
Cca05g01548 565 MobiDBLite consensus disorder prediction 527 548 - -
Cca05g01548 565 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01548 Cca-Chr5 34649720 34653336 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01548 - - gmx:100782311 998.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01548 05 34649720 34653336 Cca01g01741 01 40761298 40765522 ECH
Cca05g01548 05 34649720 34653336 Cca05g01548 05 34649720 34653336 ECH
Cca01g00348 01 4011585 4015688 Cca05g01548 05 34649720 34653336 PCT