Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01741 ATGGAAGGTGTGGCTTTGGTTGAGAAGAATGAAGGATTTGAAGGCAACAAAGAGTGGGAAAATGGCGGCAATGATAAGAGTTTTGCTGATTTGATGAAAGAGAAGGGTCGAGGGAGCAGTTCCAGCTCTGAGTTTCTGTCATCTGAGATGACAGAACTTGATGGTCAGAGTCAAGGTAGTGCTGAAGATTCGGCTTCATCAACTTCAATGGGGTGGCCGGTTCAGGAAATCTATGCATCTAATTGTACCACTCCACGTGGAAGTGAAGAATCTGAGAAAAAAGACTTGTGTAATGAGAATTTTGAGGAGCAAGTGTCAGTGTTACCAATGCCAGAGTTAGAGATTGAGATGATGAAGGAGAGGTTCGCAAAATTGTTACTTGGAGAAGATATGTCAGGTTCTGGAAATGGAGTCGCTACAGCCTTGGCTATATCCAATGCCATCACTAATCTATGTGCCACCATCTTTGGGCAACTTTGGAGATTGGAGCCTTTGTCACCAGAGAAGAAAGCAATGTGGCGAAGAGAGATGGAATGGCTTCTTTGTGTCAGTGATCATATTGTTGAATTGAAGCCTACATGCCAAACATTTCCTGATGGAAGCAAGCTTGAGGTCATGACTTGTAGGCCTCGCTCAGATCTTTATGTCAATCTGCCAGCTCTGCGAAAATTGGATAACATGCTTCTTGAAATACTAGATAGTTTTGTGAAGCCAGAGTTCAGGTATGTGGACCAAGGGGTTCTGGCCCCGGATGCAGATGGTTCATCTTCTTTTCGCCAAGCGCTTCAGCGGCTAGAGGAGAAATGGTGGCTTCCTGTGCCTCAAGTCCCTCCTTGTGGTCTCCATGAAAATTCAAGAAAGCAGTTGCAGCACAAGAGGGATTGCGCAAACCAGATATTGAAAGCTGCAATGGCCATTAACAGCACTTCTTTAGCTGAGATGGAGATTCCTGATACTTACTTGGAATCTCTTCCAAAGACTGCAAGAGCCAGCTTGGGGGATGTGATTTATAGATATATTACATCAGACAATTTTTCTCCAGAATGTTTGCTGGCATGCCTTGACTTATCATCTGAACATCAAGCCATAGAGATTGCCAACAGAGTAGAGGCTTCCATTTATATTTGGCATAAAAAGACCAACTCAAGGCCTCCAGGTCGCACTACGAGATCAGGTTCAAAATCTTCTTGGGAAATGCTCAGGGAACTGATTGTTGAGGGAGACAAAAGTGAAACTCTTGCAGAAAGATCAGAAAGCCTTCTGCTCTCCTTGAAGCAGCGTTTCCCTGGTCTCCCTCAAACAGCCTTAGATATGAGCAAAATCCAATGCAACAAGGATGTTGGGAAGTCCATTCTGGAGAGCTACTCACGAGTACTAGAGAGTTTGGCATCTAACATTGTTGCACGCATTGATGATGTGCTCTATGTGGATGACTTAACAAAACATTCTGATCAACCTCTGCCAAAAGTTGGTGTAATTGCTCAAAAGAGCATTTCAGTTCCTTACTCAATGCCTGGCCAAAGCACTACTCCATATAAATCATCATCTTTTGGCACACCAAGCTTTTCTCCTGCACAAGGTATTAGCCCTTCAAAGGGTGCAAAATCACCATTCAAGTTTCCCCATAGAGGGGTAGGGGTTAATAAAATTTTGAATGAGTTTGGTAGCATTGACAGAAAAGAGAGGGACTATGGCTTCCGTCCAATGGAGAAATTTGTTCCAACACTGAAAACATTTGATGAAGTGCCAGCAATTGAAGCAGATATTGAGTCCAGTGATTGCACAGAAGAAGATGATAAGCTCAAAGTACTAGACCGGGCGTGGCTAGAGTGA 1833 0.437 MEGVALVEKNEGFEGNKEWENGGNDKSFADLMKEKGRGSSSSSEFLSSEMTELDGQSQGSAEDSASSTSMGWPVQEIYASNCTTPRGSEESEKKDLCNENFEEQVSVLPMPELEIEMMKERFAKLLLGEDMSGSGNGVATALAISNAITNLCATIFGQLWRLEPLSPEKKAMWRREMEWLLCVSDHIVELKPTCQTFPDGSKLEVMTCRPRSDLYVNLPALRKLDNMLLEILDSFVKPEFRYVDQGVLAPDADGSSSFRQALQRLEEKWWLPVPQVPPCGLHENSRKQLQHKRDCANQILKAAMAINSTSLAEMEIPDTYLESLPKTARASLGDVIYRYITSDNFSPECLLACLDLSSEHQAIEIANRVEASIYIWHKKTNSRPPGRTTRSGSKSSWEMLRELIVEGDKSETLAERSESLLLSLKQRFPGLPQTALDMSKIQCNKDVGKSILESYSRVLESLASNIVARIDDVLYVDDLTKHSDQPLPKVGVIAQKSISVPYSMPGQSTTPYKSSSFGTPSFSPAQGISPSKGAKSPFKFPHRGVGVNKILNEFGSIDRKERDYGFRPMEKFVPTLKTFDEVPAIEADIESSDCTEEDDKLKVLDRAWLE 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01741 610 PANTHER PRONE DOMAIN-CONTAINING PROTEIN-RELATED 1 610 - -
Cca01g01741 610 MobiDBLite consensus disorder prediction 36 70 - -
Cca01g01741 610 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 1 610 IPR038937 GO:0005085
Cca01g01741 610 MobiDBLite consensus disorder prediction 1 70 - -
Cca01g01741 610 Gene3D PRONE domain, subdomain 1 109 346 - -
Cca01g01741 610 Gene3D PRONE domain, subdomain 1 347 485 - -
Cca01g01741 610 MobiDBLite consensus disorder prediction 11 33 - -
Cca01g01741 610 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 114 481 IPR005512 GO:0005085
Cca01g01741 610 ProSiteProfiles PRONE domain profile. 105 487 IPR005512 GO:0005085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01741 Cca-Chr1 40761298 40765522 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01741 - - gmx:100788452 915.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01548 05 34649720 34653336 Cca01g01741 01 40761298 40765522 ECH
Cca01g01741 01 40761298 40765522 Cca01g01741 01 40761298 40765522 ECH