Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00348 ATGGATGCTTTATCTAAGAAGACTGAAAATTCTCAAAAGAAAAAAGATGGGGTTTTCTCTTGTCTCACGGATTCGAGTGCAGAGTCCAGGGAAACCAGTTTTTGTGGTTCTAGCTCCTCAGTTTCCACTGAAGAAACGAAGGCAAAAGGCTCTTCTTCACCTCCTCCTCTTGGTTGGCCTATTCTCAAGGCTACGGTCTCCAAGTGCTCAAATTCTGATGAAAAAGAAAATAAACATAAATCCCACTTGGAAGACCCAAAATTTACCAGTATTAGTTTGAAGTTGTCAGAAGTTGACATGATGAAGGAAAGGTTTGCAAAATTGTTGCTTGGTGAAGATATGTCAGGTTCTGGAAAAGGAGTTTGCACTGCTTTGGCCATCTCAAATGCCATTACTAATCTATGTGCGACTGTATTTGGGCAATTATGGAGACTAGAACCTCTACCTTCTGAGAAGAAAGAAATGTGGCAGAGAGAGATGGAATGGCTTGTGAGTGTCAGTGATTACATTGTCGAGTTAATGCCTTCTTGGCAAACATTTCCTGATGGGAGTAAGCTTGAGGTAATGACTTGCAGGCCTAGGACAGATATTTTTATCAATCTTCCAGCTCTTCGTAAACTTGACAACATGCTTCTCGAAATTTTAGACAGTTTCACTGCCACAGAATTCTGGTATGTGGACCAAGGAATTGTAGCCCCAGATGCAGATGGTTCGGCCTCTTTTCGCAAAACAATTCAGCGGCAAGAAGAGAAGTGGTGGCTTCCTGTACCCCGTGTTCCCCCTGCAGGACTCAGTGAAGACTCAAGAAAGCAGTTGAATCATTCTCGAGAATGTGCAAACCAAATTCTAAAAGCAGCCATGGCTATCAACGGCATTGCTTTGGCTGAAATGGAAGTTCCTGAGTCATATTTGGAAGTTCTTCCTAAGAATGGAAGAACATGCTTGGGGGATTTTGTTTACCGTTACATAACATCAGATCAATTCTCCCCGGAGTGCCTGCTTGATTGCTTAGACATTTCCTCTGAGCATGTTGCACTAGAGATTGCTAACCGTGTGGAAGCAGCAATTTACGTGTGGCGTCGAAGAGCTCACTCCAGGCCCTCACCCAATCCCAACCGTTCCACTACAAAATCATCTTGGGAAATAGTCAAAGACTTCATGGTTGATGGAGATAAGAGAGAATTGCTAGCAGATAGAGCAGAGAACATTCTAGTTTCCCTGAAGCAGCGTTTCCCAGGCCTAAGTCAAACTACTCTTGATACTAGCAAGATCCAGTGCAATAAGGATGTTGGAAAATCTGTACTAGAGAGCTACTCAAGAGTTTTAGAGAGCATGGCTTTTAACATTGTGGCACGCATTGATGATTTACTCTATGTGGATGACTTGACCAAACATTCAGAGAGGTTTGCATTGGTTCCTACAACTGCTACAGTTAACGTGGTTTCTCAGCAGAAGAAGGGTACACGTTCGGTCTCAGTGTCTGTCTCAGGCACTACTCCACACAAAGCAGCAGTTGGCACACCTAGCTTTTCGCCTGCGGTTGCGCCGCTAATTAGTCCGGCAAGAGGGGAGAGAACTCCTTTCCTCAAGAATAACAACAACAGCATCAAGCCTCATCGTCGTGGATTCGGAGTTAGGAGAGTGTTGTCAAATTATCTTGGAGTGGAAACAAAGACTAAGATATGCAGCAACTCAACCGAGGTGAACTGTTCAAACCCAAGTAGCAAGAAAACTGAACAACACCAACCAGAGCAACGTCCGAAGGAAACATGCACCTTAAAAAACAGGACCAAATGA 1797 0.438 MDALSKKTENSQKKKDGVFSCLTDSSAESRETSFCGSSSSVSTEETKAKGSSSPPPLGWPILKATVSKCSNSDEKENKHKSHLEDPKFTSISLKLSEVDMMKERFAKLLLGEDMSGSGKGVCTALAISNAITNLCATVFGQLWRLEPLPSEKKEMWQREMEWLVSVSDYIVELMPSWQTFPDGSKLEVMTCRPRTDIFINLPALRKLDNMLLEILDSFTATEFWYVDQGIVAPDADGSASFRKTIQRQEEKWWLPVPRVPPAGLSEDSRKQLNHSRECANQILKAAMAINGIALAEMEVPESYLEVLPKNGRTCLGDFVYRYITSDQFSPECLLDCLDISSEHVALEIANRVEAAIYVWRRRAHSRPSPNPNRSTTKSSWEIVKDFMVDGDKRELLADRAENILVSLKQRFPGLSQTTLDTSKIQCNKDVGKSVLESYSRVLESMAFNIVARIDDLLYVDDLTKHSERFALVPTTATVNVVSQQKKGTRSVSVSVSGTTPHKAAVGTPSFSPAVAPLISPARGERTPFLKNNNNSIKPHRRGFGVRRVLSNYLGVETKTKICSNSTEVNCSNPSSKKTEQHQPEQRPKETCTLKNRTK 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00348 598 MobiDBLite consensus disorder prediction 24 50 - -
Cca01g00348 598 ProSiteProfiles PRONE domain profile. 88 470 IPR005512 GO:0005085
Cca01g00348 598 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 1 18 569 IPR038937 GO:0005085
Cca01g00348 598 Gene3D PRONE domain, subdomain 1 331 470 - -
Cca01g00348 598 Gene3D PRONE domain, subdomain 1 91 330 - -
Cca01g00348 598 MobiDBLite consensus disorder prediction 565 598 - -
Cca01g00348 598 Pfam PRONE (Plant-specific Rop nucleotide exchanger) 96 464 IPR005512 GO:0005085
Cca01g00348 598 MobiDBLite consensus disorder prediction 579 598 - -
Cca01g00348 598 MobiDBLite consensus disorder prediction 24 60 - -
Cca01g00348 598 PANTHER ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 5 18 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00348 Cca-Chr1 4011585 4015688 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00348 - - gmx:100796692 1048.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00348 01 4011585 4015688 Cca05g01548 05 34649720 34653336 PCT