Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01296 ATGCTCTTGGGAAGTTCTTCATCCATCTATGCTTCTCTCTCTGATAGAGCAAAGCTTGTTCCTTCTCTGTCTTCCTCTGCACCTTTTTTCAACTCTGTGAAGGGTGTGAGATTTTCCAGGAGAAATGTGGGTTATGGGGTTGTGGCTATGGCCTCAAAGGAGGCTAAGAACCAACAGGTTTTGGATATAGCGTTTGAACCTTTTGAGGAAGTGAAAAAAGAGCTTCTTGTCATCCCCACACTGCCCCATGCATCACTGGCAAGACAAAAATACTCTGATCAGTGCGAGGCTGCACTCAATGCACAGATCAATGTGGAATACAATGTCTCCTACGTGTATCATGCCATGTATGCCTACTTCGACAGAGACAATGTTGCTCTGAAGGGATTGGCCAAATTTTTCAAGGAATCAAGTGTGGAGGAAAGACAACATGCTGAGATGATGATGGAATATCAGAATAAGAGAGGAGGCAGGGTTCAGCTGCAGACAATGCTGATGCCATTTTCTGAGTTTGATGACGAAGAAAAGGGTGATGCATTACATGCAATGGAACTTGCATTGTCTTTGGAAAGGCTGAATAATGAGAAGCTTCTAAATTTGCACAGCTTAGCAAATGAAAACAATGATGTGCAATTGGTTGACTTTCTTGAAAGCACGTTTTTGGTTGGTCAGGTGGAAGACATTAAGAAGATCTCAGAATATGTGGCTCAGTTAAGAAGGGTTGGCAAAGGACATGGTGTTTGGCACTTTGATCAGATGCTCCTTAATGGAGATGTAGCTGCATGA 786 0.43 MLLGSSSSIYASLSDRAKLVPSLSSSAPFFNSVKGVRFSRRNVGYGVVAMASKEAKNQQVLDIAFEPFEEVKKELLVIPTLPHASLARQKYSDQCEAALNAQINVEYNVSYVYHAMYAYFDRDNVALKGLAKFFKESSVEERQHAEMMMEYQNKRGGRVQLQTMLMPFSEFDDEEKGDALHAMELALSLERLNNEKLLNLHSLANENNDVQLVDFLESTFLVGQVEDIKKISEYVAQLRRVGKGHGVWHFDQMLLNGDVAA 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01296 261 CDD Euk_Ferritin 92 252 - -
Cca05g01296 261 Gene3D - 57 257 IPR012347 -
Cca05g01296 261 SUPERFAMILY Ferritin-like 82 256 IPR009078 -
Cca05g01296 261 PANTHER FERRITIN 25 256 IPR001519 GO:0006826|GO:0006879|GO:0008199
Cca05g01296 261 ProSiteProfiles Ferritin-like diiron domain profile. 89 242 IPR009040 -
Cca05g01296 261 ProSitePatterns Ferritin iron-binding regions signature 2. 209 229 IPR014034 -
Cca05g01296 261 Pfam Ferritin-like domain 97 241 IPR008331 GO:0008199
Cca05g01296 261 PANTHER FERRITIN-2, CHLOROPLASTIC-LIKE 25 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01296 Cca-Chr5 30812480 30814599 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01296 K00522 - gmx:100781581 439.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01296 05 30812480 30814599 Cca05g01296 05 30812480 30814599 ECH
Cca07g01656 07 41990245 41992469 Cca05g01296 05 30812480 30814599 ECH
Cca01g01938 01 45262949 45265788 Cca05g01296 05 30812480 30814599 ECH