Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01938 ATGGCTCTTTCGTGTTCCAAAGTTTCTTCCTTTTCTCTCTCACCCGTTGTGGGTGATGCTCCAAAAAAGCTCACTTTTTCTTCTTTGAGTTTCGCCACCAAGGGTGGTGGGAGCAAGAACTTGAGGGTGTGTGCTGCTTCGAATgcaccagcaccagcaccagcaccagcaccagcaccTCTCTCTGGTGTGATATTTGAACCCTTTCAAGAGCTGAAGAAAGATTACCTTGCTGTTCCCATAGTTCAAAATGTTTCCTTGGCTCGTCAGAACTATGCAGATGAGTCTGAAGCTGCAATCAATGAACAGATCAATGTGGAATACAACGTTTCGTATGTGTACCACTCCCTGTTTGCGTATTTCGACAGAGACAACATAGCTCTCAAGGGGCTTGCCAAATTCTTCAAGGAATCAAGTGAAGAAGAAAGAGAGCACGCTGAAAAGTTTATGAAGTATCAGAACATTCGTGGAGGACGAGTGGTGCTGCACCCTATTACAAGTCCTCCCTCAGAATTTGAGCATTCGGAGAAAGGAGATGCCTTGTATGCCATGGAATTAGCTTTGTCTTTGGAGAAGTTGACAAATGAGAAACTTCTGCATGTTCATAGTGTGGCAAGCCGTAACAATGATCCTCAGCTGGCAGATTTCATAGAGAGCGAGTTTTTGTATGAGCAGGTTAAATCAATTAAAAAGATTGCAGAGTATGTGGCTCAACTGAGATTAGTTGGAAAGGGTCATGGTGTTTGGCACTTTGATCAAAGGCTTCTTGATGAAGATCATGTGTAA 786 0.4097 MALSCSKVSSFSLSPVVGDAPKKLTFSSLSFATKGGGSKNLRVCAASNAPAPAPAPAPAPLSGVIFEPFQELKKDYLAVPIVQNVSLARQNYADESEAAINEQINVEYNVSYVYHSLFAYFDRDNIALKGLAKFFKESSEEEREHAEKFMKYQNIRGGRVVLHPITSPPSEFEHSEKGDALYAMELALSLEKLTNEKLLHVHSVASRNNDPQLADFIESEFLYEQVKSIKKIAEYVAQLRLVGKGHGVWHFDQRLLDEDHV 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01938 261 Gene3D - 59 259 IPR012347 -
Cca01g01938 261 CDD Euk_Ferritin 94 253 - -
Cca01g01938 261 Pfam Ferritin-like domain 98 241 IPR008331 GO:0008199
Cca01g01938 261 ProSiteProfiles Ferritin-like diiron domain profile. 90 243 IPR009040 -
Cca01g01938 261 ProSitePatterns Ferritin iron-binding regions signature 1. 141 159 IPR014034 -
Cca01g01938 261 SUPERFAMILY Ferritin-like 84 257 IPR009078 -
Cca01g01938 261 ProSitePatterns Ferritin iron-binding regions signature 2. 210 230 IPR014034 -
Cca01g01938 261 PANTHER FERRITIN-2, CHLOROPLASTIC 1 260 - -
Cca01g01938 261 PANTHER FERRITIN 1 260 IPR001519 GO:0006826|GO:0006879|GO:0008199
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01938 Cca-Chr1 45262949 45265788 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01938 K00522 - gmx:547988 412.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01629 05 35692155 35694385 Cca01g01938 01 45262949 45265788 ECH
Cca01g01938 01 45262949 45265788 Cca01g01938 01 45262949 45265788 ECH
Cca01g01938 01 45262949 45265788 Cca05g01296 05 30812480 30814599 ECH