Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00584 ATGGAGTTGATGGGGGGTGGAAAGTTTAAGGGGTGCTTTGTTTTTGTGTTCTTTGTTGCACTGTTGGTGGGTTTAGTGAGTGGAATTGGTGTTAATTGGGGCACACAATTATCACACCCTTTGCCAGCATCCACTGTGGTGAAAATGCTGAGGGACAATGGTTTTCAGAAAGTTAAGCTTTTCGATGCTGACCCTGATATTTTAAGTGGTCTTAAGAAGTCTGGGATTCAGGTGATGGTGGGTATACCAAATGATATGCTTTACACATTGGCTAACAGCATGCAAGCAGCTGAAAAATGGGTTTCCAAGAATGTTTCAGCACATGTCTCATCTGGGGGAGTGGACATCAGGTATGTTGCAGTGGGAAATGAACCTTTCTTGTCAACTTACAATGGTACCTTTGAAGCCACAACACTTCCAGCTCTTCAAAACATCCAATCAGCTCTTGTGAAAGCTGGTTTAGGCAATCAGGTTAAAGTCACTGTCCCTTTAAACGCTGACGTGTATCAGAGCGCACAAATGCCTTCCGATGGGGACTTCAGGCAAGACATCCACGACCTCATGGTGCAGATTGTCAAGTTCTTGAGCCAGAACAACGCCCCATTTACTGTGAACATCTATCCTTTCATAAGCCTCTATTCAGATGCCAATTTTCCTGTTGACTACGCCTTCTTCAATGGCTTCCAGTCTCCTATAAATGACAACGGAAGGATCTATGACAATGTCTTTGATGCCAACTATGACACTCTCGTGTGGGCGCTGCAGAAGAACGGTTTTGCAAACATGCCTATAATTGTAGGAGAAGTTGGGTGGCCCACAGATGGAGACCGAAATGCGAATCTTCAATATGCGCAGCGCTTTAACCAAGGCTTTATGTCGCGCTATATCGCTGGAAAGGGGACACCGATGAGGCCTGGTCCTATGGATGCTTACTTGTTTAGTCTCATAGATGAAGATAGCAAGAGCATTCAGCCAGGTAATTTTGAAAGGCATTGGGGGTTGTTTTACTATGATGGACAACCCAAGTACCAGCTTAACATTGGATCAAGAACAAATGGCTTAGTAGCTGCAACTGGGGTGGCGTATCTGGCTAAAAAGTGGTGCATTTTGAAACCCTCAGCAAACCTCAATGATGATCAAGTGGCACCAAGTGTGGCTTATGCTTGTCAAAATGCAGATTGCACTAGTCTTGGATATCAAACTTCATGTGGTGGTTTAGATGCTCGTGGTAACATCTCTTATGCATTCAATAGCTACTACCAAGTGAATGATCAGATTGACAGTGCATGCAGATTCCCTGGCCTTTCTGTTGTTACTGACAAGGATCCTTCTTCTGGAGATTGCAAGTTCAGAATCATGATCCAGACAGATTCTGCTGGCTTATATGGGAATGGGAGAATCGGGTCTCTCAGAATAGTACTCTTGGTATTTTTGTTTTTCTCTCTTCTGTGA 1452 0.4408 MELMGGGKFKGCFVFVFFVALLVGLVSGIGVNWGTQLSHPLPASTVVKMLRDNGFQKVKLFDADPDILSGLKKSGIQVMVGIPNDMLYTLANSMQAAEKWVSKNVSAHVSSGGVDIRYVAVGNEPFLSTYNGTFEATTLPALQNIQSALVKAGLGNQVKVTVPLNADVYQSAQMPSDGDFRQDIHDLMVQIVKFLSQNNAPFTVNIYPFISLYSDANFPVDYAFFNGFQSPINDNGRIYDNVFDANYDTLVWALQKNGFANMPIIVGEVGWPTDGDRNANLQYAQRFNQGFMSRYIAGKGTPMRPGPMDAYLFSLIDEDSKSIQPGNFERHWGLFYYDGQPKYQLNIGSRTNGLVAATGVAYLAKKWCILKPSANLNDDQVAPSVAYACQNADCTSLGYQTSCGGLDARGNISYAFNSYYQVNDQIDSACRFPGLSVVTDKDPSSGDCKFRIMIQTDSAGLYGNGRIGSLRIVLLVFLFFSLL 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00584 483 Gene3D Glycosidases 28 353 - -
Cca05g00584 483 Gene3D - 362 460 - -
Cca05g00584 483 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 5 18 460 - -
Cca05g00584 483 ProSitePatterns Glycosyl hydrolases family 17 signature. 262 275 IPR000490 GO:0004553|GO:0005975
Cca05g00584 483 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 18 460 IPR044965 GO:0004553|GO:0005975
Cca05g00584 483 Pfam X8 domain 366 435 IPR012946 -
Cca05g00584 483 Pfam Glycosyl hydrolases family 17 29 346 IPR000490 GO:0004553|GO:0005975
Cca05g00584 483 SMART X8_cls 366 450 IPR012946 -
Cca05g00584 483 SUPERFAMILY (Trans)glycosidases 29 346 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00584 Cca-Chr5 13480140 13483762 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00584 9 459 Glycoside Hydrolase AT4G31140 71.930 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00584 K19893 - gmx:100790297 889.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00584 05 13480140 13483762 Cca03g00114 03 1579840 1581953 PCT
Cca03g01499 03 33593396 33597731 Cca05g00584 05 13480140 13483762 PCT