Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00114 ATGGGTCGAGCCATGTGGGGGCTTTGTTTGATATTTGCCCTAGCTCATTACCAATTTCAAGGTGCCCATGGAGCAGATTCTGTACCAGCTGGTCTTGGTATCAATTGGGGTGCATTAGCATCCCACCCTTTGAGTCCTGACATTGTGGTAAATTTGTTGAAGGACAATGGCATCAAGAAGGTAAAACTTTTCGATGCAGATTCTTGGGTCGTGAGTGCTTTCTCTGGCACAGACATTGAAGTCATGGTCGGAATACCTAATGATCAATTGAGTAAATTTGCTGCAAGTAGCAGAGATGCAGAACATTGGGTCAAAGAAAATGTCACCATACATATTCACGGTCATGATCATCGTGGGGGCGTCAACATCAGATACATATCTGTTGGAAATGAACCATTCATGGAAGATTACAACGGTATGTACGTTAAAACCACATTCCCAGCAATGCAAAATATTCAAAATGCCCTCGATAAGGCTGGTCTTGGAGACAAAGTGAAGGTAACTACAGCTTTGAATGCCGATGTTTACAGCTCTCCTTCTGACAAGCCATCAGATGGAGAATTTCGAAGTGACATTCGTGATGCCATAAACCAAATACTAAGTTTTCTTCACCAAAGGGACTCACCATTTCTTGTCAACATATACCCTTTTCTTAGTCTCTTCCAGAATGACAATTTTCCTAAAGAGTTAGCATTCTTTGATGGACAAGGTCAAACAATCCACGACAAAAATGCACAATATACCAACGTGTTTGATGCAAACTTTGACACCCTTGTTTGGTCATTGAAAAAAGCTGGCTACCCTGACATGAGAGTTGTGGTTGGTGAAATAGGGTGGCCAACTGATGGTAACAAAAATGCTAACACCTATAATGCAAAGAGGTTCTACCACGGGTTGCTCAAGAAAATGGCAAGCAAAAAGGGTACTCCACTTAGACCTGGAGCCATGGACATGTATCTGTTTTCTCTTTTTGATGAGGACTTGAAGAGTATTGCACCTGGCAACTTTGAGCGTCACTGGGGGATTTTTGGCTACGATGGAAGGCCTAAGTTTCCCATTGATTTTTCTGGCCAGGGACAAGACCAATGGCCTGTGGCAGCCAAAGGTGTTGTTTACCAAGATCGTAAATGGTGTGTCCTAAATAGTGATGTTAAGAACCTTAGCAAGGTGCCAAGTGCATTGGACTATGCTTGTGGTGGTGCTGATTGTACAAGCTTAGGATTTGGTTGTTCTTGTGAAAATCTAGACCTGGCTGGCAAGGCTTCTTTTGCTTTCAATCAGTATTTTCAGACGAGGGATCAAAGCGTTGAGGCTTGTAATTTCGATGGATTGGCCACTATTGTAACACAGGATCCATCAAGGGGAAGTTGCGTATTCCCTGTGGAAATAGAAAGCAATGGTAACATGGTTAGAGCTATGCGTACGCTGGGAAGCCTTTTGATTGGATTCTCATTGTTTTTCATAACATATGCGTAA 1476 0.4262 MGRAMWGLCLIFALAHYQFQGAHGADSVPAGLGINWGALASHPLSPDIVVNLLKDNGIKKVKLFDADSWVVSAFSGTDIEVMVGIPNDQLSKFAASSRDAEHWVKENVTIHIHGHDHRGGVNIRYISVGNEPFMEDYNGMYVKTTFPAMQNIQNALDKAGLGDKVKVTTALNADVYSSPSDKPSDGEFRSDIRDAINQILSFLHQRDSPFLVNIYPFLSLFQNDNFPKELAFFDGQGQTIHDKNAQYTNVFDANFDTLVWSLKKAGYPDMRVVVGEIGWPTDGNKNANTYNAKRFYHGLLKKMASKKGTPLRPGAMDMYLFSLFDEDLKSIAPGNFERHWGIFGYDGRPKFPIDFSGQGQDQWPVAAKGVVYQDRKWCVLNSDVKNLSKVPSALDYACGGADCTSLGFGCSCENLDLAGKASFAFNQYFQTRDQSVEACNFDGLATIVTQDPSRGSCVFPVEIESNGNMVRAMRTLGSLLIGFSLFFITYA 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00114 491 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 8 473 IPR044965 GO:0004553|GO:0005975
Cca03g00114 491 ProSitePatterns Glycosyl hydrolases family 17 signature. 270 283 IPR000490 GO:0004553|GO:0005975
Cca03g00114 491 Pfam Glycosyl hydrolases family 17 32 355 IPR000490 GO:0004553|GO:0005975
Cca03g00114 491 Gene3D - 371 467 - -
Cca03g00114 491 SMART X8_cls 376 459 IPR012946 -
Cca03g00114 491 SUPERFAMILY (Trans)glycosidases 32 355 IPR017853 -
Cca03g00114 491 Pfam X8 domain 376 446 IPR012946 -
Cca03g00114 491 Gene3D Glycosidases 31 362 - -
Cca03g00114 491 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 8 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00114 Cca-Chr3 1579840 1581953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00114 27 471 Miscellaneous Gene Families AT5G64790 55.056 0.0 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00114 - - gmx:100794658 823.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00114 03 1579840 1581953 Cca03g00114 03 1579840 1581953 ECH
Cca05g00584 05 13480140 13483762 Cca03g00114 03 1579840 1581953 PCT