Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01499 AtggagttgggtaggtgtggtggtgttgttgttgtgttgtttgggttggtgttggtgGGGTCAGTGAGTGGGATTGGTGTGAATTGGGGGACACAGTGCACACACCCTTTGTCACCGTCTAAGGTGGTGAAAATGCTGAAGGACAATGGCATTCAGAAGGTTAAGCTTTTTGATGCTGATGCCGGTATCTTGGATGCTCTCAAGAAGTCTGGGATACAGGTCATGGTGGGGATTCCGAATGACATGCTTTATTCGCTGGCTAACAGTGTGGAAGCAGCTGAAAAATGGGTTTCCAAGAATGTTTCCAAACATGTCTCTTCTGGTGGAGTGGATATCAGGTACGTTGCAGTGGGGAATGAACCATTCTTGTCAACATACAACGGCACCTACGAAACCACAACTCTTCCAGCTCTCCAAAACATCCAGGCAGCTCTCACAAAATCCGGTTTAAGCAACCGTGTTAAAGTAACCGTTCCCTTAAACGCCGACGTCTATCAAAGCTCCTCAGAAAATCCATCCGACGGTGGTTTCAGACCTGACATCAACAATGTCATGCTGCAGATTGTCAAGTTCTTGAACGACAATGGAGCTCCCTTCACAGTGAACATTTACCCTTTCATCAGCCTCTACTCAGACCCCAATTTCCCTGTTGACTACGCCTTTTTTAATGGCTACCAGCCCGCCATAAATGACAACGGAAGGACCTATGACAACGTGTTTGATGCCAACCACGACACTCTAGTGTGGGCCCTGCAGAAGAATGGGTTTGGAAACTTGCCCATAATTGTGGGGGAAATTGGTTGGCCAACAGATGGGGACCGAAATGCAAACCTTCAATATGCACAACGTTTTAATCAAGGTTTCATGTCACGTTATATGTCTGGAAAAGGGACCCCAATGAGGCCTGGTCCTATAGATGCTTATTTGTTTAGTTTCATAGATGAAGATAGCAAAAGCATTCAGCCAGGGAACTTTGAGCGTCATTGGGGGTTGTTTTACTTTGATGGCCAACCCAAGTACCAACTTAATCTTGGGTCAGCACGTGGTAATGGGTTAGTAGGGGCTAGTGGTGTTGATCATTTGGCTAAAAAATGGTGCGTTTTGAAACCCTCTGCAAACCTTAACGATGACCAAGTCGCACCTAGTGTGGCATATGCATGTCAAAATGCTGATTGCACTAGTCTTGGCTATGGAACTTCGTGTGCCAATTTGGATGTTCATGGTAACATTTCTTATGCGTTTAATAGCTACTACCAGATTAATGACCAGATGGATAGTGCATGCAAATTCCCGGGGCTTTCTATGGTCACTGACAAGGATCCTTCCGTTGGAGATTGCAAATTCAGAATCATGATCGAGACAGATTCTGCGGAGTTACATGCAAGAGTTGGATCTCTAACAACAGTGCTATGTTTTTTAGTACTTTTGCTATTTTGTAATCTTTGGTTTTGA 1452 0.4304 MELGRCGGVVVVLFGLVLVGSVSGIGVNWGTQCTHPLSPSKVVKMLKDNGIQKVKLFDADAGILDALKKSGIQVMVGIPNDMLYSLANSVEAAEKWVSKNVSKHVSSGGVDIRYVAVGNEPFLSTYNGTYETTTLPALQNIQAALTKSGLSNRVKVTVPLNADVYQSSSENPSDGGFRPDINNVMLQIVKFLNDNGAPFTVNIYPFISLYSDPNFPVDYAFFNGYQPAINDNGRTYDNVFDANHDTLVWALQKNGFGNLPIIVGEIGWPTDGDRNANLQYAQRFNQGFMSRYMSGKGTPMRPGPIDAYLFSFIDEDSKSIQPGNFERHWGLFYFDGQPKYQLNLGSARGNGLVGASGVDHLAKKWCVLKPSANLNDDQVAPSVAYACQNADCTSLGYGTSCANLDVHGNISYAFNSYYQINDQMDSACKFPGLSMVTDKDPSVGDCKFRIMIETDSAELHARVGSLTTVLCFLVLLLFCNLWF 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01499 483 ProSitePatterns Glycosyl hydrolases family 17 signature. 259 272 IPR000490 GO:0004553|GO:0005975
Cca03g01499 483 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 5 12 460 - -
Cca03g01499 483 SUPERFAMILY (Trans)glycosidases 25 343 IPR017853 -
Cca03g01499 483 Pfam X8 domain 364 434 IPR012946 -
Cca03g01499 483 SMART X8_cls 364 448 IPR012946 -
Cca03g01499 483 Gene3D - 360 458 - -
Cca03g01499 483 Gene3D Glycosidases 24 350 - -
Cca03g01499 483 Pfam Glycosyl hydrolases family 17 25 343 IPR000490 GO:0004553|GO:0005975
Cca03g01499 483 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 12 460 IPR044965 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01499 Cca-Chr3 33593396 33597731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01499 9 479 Glycoside Hydrolase AT4G31140 68.577 0.0 693
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01499 K19893 - gmx:100796552 893.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01499 03 33593396 33597731 Cca05g00584 05 13480140 13483762 PCT