Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00516 atGAGGTTGCTAGACCCCAACGCCAAAAACCCTAAGAGCCCTCGGAGATCCTCTTCGCTGGCCATAATGGAAGGAATTTTGGCCAGGAAAACCTTCTTCTACGGCAAGCTTCCCTCCCAACCTCTCAGACTCACCGTCCTCAAACTAGACGGTTCCTCTTTCCATATTCAAGTTTCGAAGACGGCCACCGTTGCGGAACTCAAGGACGCAGTCGAGGCCGTGTTCAGTCACGTGCCTCACAAGGGGCCAGCCAAAATTTCATGGGTGCATGTTTGGGGGCAGTTTTGCTTATGCTATGATGGACAGAAGCTAGTTACGGAGAAGGATTATCTTCGAAATTATGGTATCAAGGATGGTGACCAGCTTCGTTTCATTCGCCATGTCTCAAACAATTGCTGTGTTCAAAGAAAGCGGTTGAAGAATAGAGTTGTCTATTTGAAACAGCACAGAAGGTCAACACAAGTGAATAGCTATCAACCCGAAGGAAATTGTAATGATGATGAGACTGGTTCTGATGATGAAGCCACAAAGAATGCGAAGATGGAACATCATATTGAAGAAGAAAAAGGACCAAAGCGCGTTGGAAAGAACAAATTAGTTGGCTTTGTGGGAGAGTTGTTCTCATACACTCCACTAGCAGTTGTGAGAAGGACTACAACTAGAAGCAGGATTTGGCCATCCACAATTCCGAGACGTTTACTGGGTAGTTTTAGAAAGATTAGAAGTTTTGTATTCTTTGGCAGGGGGAGGGACTATTCTCGGAGACTTCCATGGAGACGGTAG 783 0.4585 MRLLDPNAKNPKSPRRSSSLAIMEGILARKTFFYGKLPSQPLRLTVLKLDGSSFHIQVSKTATVAELKDAVEAVFSHVPHKGPAKISWVHVWGQFCLCYDGQKLVTEKDYLRNYGIKDGDQLRFIRHVSNNCCVQRKRLKNRVVYLKQHRRSTQVNSYQPEGNCNDDETGSDDEATKNAKMEHHIEEEKGPKRVGKNKLVGFVGELFSYTPLAVVRRTTTRSRIWPSTIPRRLLGSFRKIRSFVFFGRGRDYSRRLPWRR 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00516 260 Pfam Ubiquitin-like domain 42 128 IPR040610 -
Cca05g00516 260 SUPERFAMILY Ubiquitin-like 38 133 IPR029071 -
Cca05g00516 260 PANTHER - 5 257 - -
Cca05g00516 260 MobiDBLite consensus disorder prediction 170 190 - -
Cca05g00516 260 MobiDBLite consensus disorder prediction 154 190 - -
Cca05g00516 260 Gene3D - 36 135 - -
Cca05g00516 260 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 5 257 IPR039690 GO:0000398|GO:0005689
Cca05g00516 260 CDD Ubl_SNRNP25 42 127 IPR040610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00516 Cca-Chr5 11703721 11707436 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00516 - - gmx:100820296 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00516 05 11703721 11707436 Cca05g00516 05 11703721 11707436 ECH
Cca03g01578 03 34539723 34541822 Cca05g00516 05 11703721 11707436 ECH
Cca05g00516 05 11703721 11707436 Cca03g01579 03 34542636 34543730 PCT