Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01578 ATGAAGGAGAGAAGGTTGTTGATTGTTTCTCACCAAATCCCTCCACCATCTCTGACCACGCACTTCTCTTCGCCGGCCAACCTAGATGCCACCTTTTCCGGCGACGGAGTTCCTTTCGAAACGCTCAACCTCAACATCGTCAGATTGGACGCTTCTTACTTCCGTGTTGAAGTCGCAAATGCAGCAACTGTTGCGGATCTCAAGCAGGCAGTGGAGGCTGTTTTCTATCACATGCCTCGGAAGGGACCGGGAAAAATATTATGGCCACTTGTTTGGCGGCAATTTTGCTTATGCTATCAAGGACAAAAATTAGTTTCAGAAACGGATTATATTACAGATTATGGCATCAAGGACGGTGACCAGCTTCATTTCGTGCGCCATGTATCTGACACTTGCAGTTTTGAGAGAAAGCAGCGGAAGAAGCGCATTATCAATTTGAAACAACACAGGAGGTCATCGTCACAAGAGAATATATATCAAGAGAAAGAACATAAAGACGACGACATTGGTTTGGATGATATAGTCATAGAGAATGGGAAGATCCAGCATAGCAATGCAGAAGAAAATCGAGGAGGAAAGAGTAGGTTAGCTGGCTTTTGGGGAGGATTGTTCTCTCATAGCCGGCTGGCAGTTATGAGAAGAGCTAGAATTGAGGGCAGGATTTGTTGCTCGATGATTGCTAGATGTGTAGTGAGCAGTTTTAGAAAAATTAGAAGAATTTTATTACGCTATTGCTGGAGGCAGCATTACCCTCGGCGACCCACTTGGAGAGAATATTGA 780 0.4474 MKERRLLIVSHQIPPPSLTTHFSSPANLDATFSGDGVPFETLNLNIVRLDASYFRVEVANAATVADLKQAVEAVFYHMPRKGPGKILWPLVWRQFCLCYQGQKLVSETDYITDYGIKDGDQLHFVRHVSDTCSFERKQRKKRIINLKQHRRSSSQENIYQEKEHKDDDIGLDDIVIENGKIQHSNAEENRGGKSRLAGFWGGLFSHSRLAVMRRARIEGRICCSMIARCVVSSFRKIRRILLRYCWRQHYPRRPTWREY 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01578 259 CDD Ubl_SNRNP25 44 127 IPR040610 -
Cca03g01578 259 PANTHER UBIQUITIN-LIKE SUPERFAMILY PROTEIN 30 244 - -
Cca03g01578 259 Gene3D - 39 137 - -
Cca03g01578 259 SUPERFAMILY Ubiquitin-like 41 130 IPR029071 -
Cca03g01578 259 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 30 244 IPR039690 GO:0000398|GO:0005689
Cca03g01578 259 Pfam Ubiquitin-like domain 43 128 IPR040610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01578 Cca-Chr3 34539723 34541822 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01578 - - gmx:100790105 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01578 03 34539723 34541822 Cca03g01578 03 34539723 34541822 ECH
Cca03g01578 03 34539723 34541822 Cca05g00516 05 11703721 11707436 ECH