Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01043 ATGAACCCTCCTAACTCTTCATCCCACGACAGAACTAGATCCGTTCCCGTCACCATGCAGCTTTTTCACAAACCCACCAAGGCTCAGTCCCTTGTTAATTTCATTCTAATATCTTCTTCATTCTGCGCCCTCTATGTCATCGTATCAGTGCTATTGTTGGGGCCTTCAAGACTAATTCATGTGAACAAGACAACATCACAAGATGTGTCCGCACCAACCACCCTTGACCACCTCGTGTTTGGAATTGCTTCGAGCAAGAACTCATGGCTGAAGAGGAAGGAGTACGTGAAGCTGTGGTGGAACAGCAACACCCACAAACCTATGAAGGGGTGTGTGTTTTTGGAAAGCCTCACAGATGAAGAACGTGCAAGGAACGAGAAAGATACCTCTCTTCCTCCTCTTTGCGTCTCTCAGGACACTTCACGGTTCCGTTACACTAACAAGGGTGGACTGCGCTCCGCGATACGCGTGGCACGTGTGGTGGCGGAGACCGTGGCGATGAACAGCAATGATTCGGACGTGAGGTGGTACGTGTTTGGAGATGATGACACGGTTTTCTTCCCACAGAATGTGGTGAAGACTCTTTCCAAATATGATCACGAGCTTTGGTACTACATTGGTGCAAACTCTGAGGTGTATGAGCAGAACCGCGTGTTTGGTTTTGGAATGGCTTTTGGAGGGGCAGGTTTTGCTATCAGCTCCTCTTTGGCAAAGGTCTTGGCCAAGGTTTTTGATTCCTGTATAGAAAGGTACCCTCATCTCTATGGAAGTGATGGCAGGGTCTACTCTTGCTTGGCAGAACTTGGGGTAGGATTAACACATGAACCCGGCTTTCACCAGGTAGATTTAAAGGGAAATACCTTTGGCCTATTGGCGGCACATCCTTTAACCCCTTTGTTGTCCCTGCATCATCCGGATTACACTGATCCAATCTTTCCAAACATGACAACCACACAAGCTCTCAAGCATTTATTTGAAGCAGCAAATGTGGATTCCCAGAGGATGCTGCAGCAAGCAATTTGCTATGACAGATGGTTTTCATGGACAATTTCAGTGTCATGGGGCTATGCTGTTCAGGTTTTCCCAAACCACATGCTTTTGCCAGAAGTTCTGAAGGTGCAAGAGACATTCAGGCAGTGGAGGAAGGGAAACATGTTGGCAAAATCATACACTTTTAACACTAAAGAACTTCACCATGACCCTTGTAAAAGATCCACCGTTTTCTATCTGGATAGTGTGTATTCTGGAAAGGATGGCATCATTAGCAGTTACAAGAAATCTTTTCAGAATTGCTCAAACAAAGCCGAGTCGCCAGAGAAATTGGAAGTGATCAAAGTGGTCGCAAATAAGCTAGACCTTAACATCAAACAGTTAAAGGCCCCAAGAAGGCACTGTTGTGATGTGCTGCCATCTACTGCCCGGGACCAAATGGAAATCTCAATGAGGGAATGCAAAGATGAAGAATTGGTTTACATGTACTGA 1482 0.4602 MNPPNSSSHDRTRSVPVTMQLFHKPTKAQSLVNFILISSSFCALYVIVSVLLLGPSRLIHVNKTTSQDVSAPTTLDHLVFGIASSKNSWLKRKEYVKLWWNSNTHKPMKGCVFLESLTDEERARNEKDTSLPPLCVSQDTSRFRYTNKGGLRSAIRVARVVAETVAMNSNDSDVRWYVFGDDDTVFFPQNVVKTLSKYDHELWYYIGANSEVYEQNRVFGFGMAFGGAGFAISSSLAKVLAKVFDSCIERYPHLYGSDGRVYSCLAELGVGLTHEPGFHQVDLKGNTFGLLAAHPLTPLLSLHHPDYTDPIFPNMTTTQALKHLFEAANVDSQRMLQQAICYDRWFSWTISVSWGYAVQVFPNHMLLPEVLKVQETFRQWRKGNMLAKSYTFNTKELHHDPCKRSTVFYLDSVYSGKDGIISSYKKSFQNCSNKAESPEKLEVIKVVANKLDLNIKQLKAPRRHCCDVLPSTARDQMEISMRECKDEELVYMY 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01043 493 Gene3D - 65 338 - -
Cca04g01043 493 PANTHER FRINGE-RELATED 27 491 - -
Cca04g01043 493 Pfam Protein of unknown function, DUF604 215 466 IPR006740 -
Cca04g01043 493 PANTHER TRANSFERRING GLYCOSYL GROUP TRANSFERASE 27 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01043 Cca-Chr4 11391975 11394738 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01043 31 458 Glycosyltransferase AT1G05280 53.563 1.81e-169 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01043 - - gmx:100784602 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01043 04 11391975 11394738 Cca04g01043 04 11391975 11394738 ECH
Cca10g00740 10 8383973 8385992 Cca04g01043 04 11391975 11394738 PCT
Cca04g01043 04 11391975 11394738 Cca10g00741 10 8389434 8396507 PCT