Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03071 ATGAGGTGCTTTCTGCCTTGTTTTCGCACTTCTAAACGCCGAAACCAATCATCTTCTGCAGATGCAACTCCTACACAAACCCGTGTGGGAGAAGAACCAGTTGTTCAAGAACTCATTGATTGCATAGCGGAATTAAAAATAAAAAACGAAGAGCAATCAAATAACAGTGCTGGAATCATCAAGGATGAGCATGAAAAAACATCAAAGGAAGATGAGAACAAGGATGGCCGTGAAGAAGAAGATGATGAGATTAACAAAAGATCGCATCAAGAAGAGTCTTCGGAGTCACTGTTCTCTCTCTCCATTTGTTCTCGAAAACAAGTTTCAGATGCCGATGTTGAAGTCAACAGTGCAATGCAATTCGTAGGCAAAAGAGAACATGTTTCGTCGCTTCTGAGTCCAGGTGAAAAATTTTCTCAAGAGCAGCAACCAAGTTCCATTGCCATAAAGAAGGAACAAGAATCTTCGGCCAATGAACCGATCAATAAGTTGGACGAAAACGAAGGAGAAAAAGAGAAAGCGAATCACCCTGTCCCTCATTATAGGTATAGAGATTGCCATGATGAGGGATACGATGATATTAATTTAGATGAAAGTGATTTGGATGCTACGGTTGTAGATGATGATGATCGTCACAGTGAGAAGAGAGAAAAGGAAGAAGAGTCTTCGGAATCTTTGTTTTCTCTGTCTGCTGATTCTAGAATTCGAATTTCATCAGCTGAAGAAGCAGAGAACGAAGTTAACAGTCTAATGCCATTGCCAGATCATGGTACAAAATACGTCACACAAAAAGGAACAAAAGGGAAGATTCAGGATGTTTCCTCAGTGCTGAATCCAATTGAGAATCTTACACAAGGGAGGATTGGCAAAGAAACAGTGCTTCAGCCACTGAAGAAGGATAAAGAAAACATGAACTTGGTAGTGCAAGATGTTAACATACCCATCAGTCCAGAGCCTAGTTTGAAGGTGGCAAAGCGCAAGCCAAGGCAGAAGTTGAATGATAAGAAGGAAGAAATTGAAATTGGGGTTGACACAAGCCTCTCGAGCTGGTTGGCTGAATCGGAAACCACGCCCAAAGGAAGAAGAGGTTCACCTTGGAGTCACGAGGAGAGGCCAATTTTAGGAGCATTAACTGTTGATGAGATAAGGATGTTTTCTATATCTATATCTCCAAAAAAGTCTAGTAGCCGGAGTCCGGACGAGACACCCATCATAGGTACTGTTGGGAGCTACTGGAGTCACACAGAGCAGAGTATGGAGTTGGAATTCAACAAAAGTGGAAAGGATCTGAAAAGAGGTTCAACAGCATTACAGGCCAGACTAGAACAAGCGTTTGAAGCCAGTGTTTCAGAAGTTTGA 1359 0.4194 MRCFLPCFRTSKRRNQSSSADATPTQTRVGEEPVVQELIDCIAELKIKNEEQSNNSAGIIKDEHEKTSKEDENKDGREEEDDEINKRSHQEESSESLFSLSICSRKQVSDADVEVNSAMQFVGKREHVSSLLSPGEKFSQEQQPSSIAIKKEQESSANEPINKLDENEGEKEKANHPVPHYRYRDCHDEGYDDINLDESDLDATVVDDDDRHSEKREKEEESSESLFSLSADSRIRISSAEEAENEVNSLMPLPDHGTKYVTQKGTKGKIQDVSSVLNPIENLTQGRIGKETVLQPLKKDKENMNLVVQDVNIPISPEPSLKVAKRKPRQKLNDKKEEIEIGVDTSLSSWLAESETTPKGRRGSPWSHEERPILGALTVDEIRMFSISISPKKSSSRSPDETPIIGTVGSYWSHTEQSMELEFNKSGKDLKRGSTALQARLEQAFEASVSEV 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03071 452 MobiDBLite consensus disorder prediction 52 99 - -
Cca03g03071 452 Coils Coil 35 55 - -
Cca03g03071 452 MobiDBLite consensus disorder prediction 57 93 - -
Cca03g03071 452 MobiDBLite consensus disorder prediction 133 155 - -
Cca03g03071 452 MobiDBLite consensus disorder prediction 126 268 - -
Cca03g03071 452 MobiDBLite consensus disorder prediction 156 191 - -
Cca03g03071 452 MobiDBLite consensus disorder prediction 1 33 - -
Cca03g03071 452 MobiDBLite consensus disorder prediction 390 409 - -
Cca03g03071 452 PANTHER - 64 143 - -
Cca03g03071 452 PANTHER - 142 447 - -
Cca03g03071 452 MobiDBLite consensus disorder prediction 205 225 - -
Cca03g03071 452 MobiDBLite consensus disorder prediction 10 30 - -
Cca03g03071 452 PANTHER ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) AMIDOTRANSFERASE SUBUNIT 142 447 IPR039300 GO:0007142
Cca03g03071 452 PANTHER ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) AMIDOTRANSFERASE SUBUNIT 64 143 IPR039300 GO:0007142
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03071 Cca-Chr3 52133653 52136271 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03071 - - ccaj:109818205 819.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01818 02 37633278 37634951 Cca03g03071 03 52133653 52136271 ECH
Cca03g03071 03 52133653 52136271 Cca03g03071 03 52133653 52136271 ECH
Cca03g03071 03 52133653 52136271 Cca02g00984 02 26103783 26105738 PCT