Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca02g00984 | ATGGGTTGCTTTCTTGGTTGTTTTGGTTCCTCCAAACACAGAAAGCACAAGCACAACGCTCATGTTCATAGAAATGGTAGTAGCAACAGCAAGCAAGAGCAACCTAGTGTCTCTTTGGTTCAGGATTGCTCCAAAAATGCTGTGAACCCTTCACCACAACTCCAGGATAAAAGTGAGGAGCAAGTCAGTGTGAGTAGCAGAAAGAAAGTGACATTTGATTCCCATGTGAAGACCTATGAGCCTGTTTTGGCTGAAGAATTTGAAGAGAGGAAGAGTGAGGAAGGTGGAAAGGAGGAAGCTTTGGCCCAATCAAAGTCATCTTTCTCTGAAGATAGTTCTCTGACTTCAACGGGATCTTTCCCTCCCAACCATAGGTACCAGAATTGCCGGGACAGtgatgaggaggaggaagagattgattacggggacagtgatcctagtgatgaagatgaggatgatgatgTCATCAGAGAAGAATGCATCGGAGAAGATGGGGTGGTGGTAACTGCTGCTTCTGATCATGTGTTTGCTGAAGAGGATGTTGATGTGAAGTCAATTGGATCCAACCCCAATGCTAGAGACAGAAGTGTTTATGTTCATCCTGTGCTGAACCCAGTGGAGAATCTCACTCAGTGGAAAGCTGTTAAGGCTAAAAGAACACCACCATCAAGGCCTCAGAAAGAGAATGATTTGCCATTTGGTGTCAAAAAACCATCTTTCAGCTTGAATTCAGAAACTGACGCACCAAAGAAGTTGAACCAGGATATTCCAGTTGATGCCAGCTTGTCAAATTGGTTGTTCTCATCAGAAACTACACCACAAACAAACAAGGCTGGCTCAGTGACTTTTGATGCTGGTACCCCTGACAGGAGCACAACCTCACAAGGTTCATATTCTGTGATAAGTCATGAAGATAGGCCAATTTTAGGGGCATTGACATTGGAAGAGATCAAACAATATTCGGCTACTTCGTCTCCAAGGAAGTCGCCAAGTAGGAGTCCAGATGAGATGCCTATTATTGGCACTGTTGGAACCTACTGGAATGTCTCTGCTGAGAATTCTGGCTCAGCTTCTTCCTTTAAAGGGATTCCAAACACAACAAGCAAGTACAGAGAGGTAAAGATGAGGTGA | 1131 | 0.4164 | MGCFLGCFGSSKHRKHKHNAHVHRNGSSNSKQEQPSVSLVQDCSKNAVNPSPQLQDKSEEQVSVSSRKKVTFDSHVKTYEPVLAEEFEERKSEEGGKEEALAQSKSSFSEDSSLTSTGSFPPNHRYQNCRDSDEEEEEIDYGDSDPSDEDEDDDVIREECIGEDGVVVTAASDHVFAEEDVDVKSIGSNPNARDRSVYVHPVLNPVENLTQWKAVKAKRTPPSRPQKENDLPFGVKKPSFSLNSETDAPKKLNQDIPVDASLSNWLFSSETTPQTNKAGSVTFDAGTPDRSTTSQGSYSVISHEDRPILGALTLEEIKQYSATSSPRKSPSRSPDEMPIIGTVGTYWNVSAENSGSASSFKGIPNTTSKYREVKMR | 376 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca02g00984 | 376 | MobiDBLite | consensus disorder prediction | 269 | 301 | - | - | |
| Cca02g00984 | 376 | MobiDBLite | consensus disorder prediction | 214 | 253 | - | - | |
| Cca02g00984 | 376 | MobiDBLite | consensus disorder prediction | 61 | 100 | - | - | |
| Cca02g00984 | 376 | MobiDBLite | consensus disorder prediction | 320 | 339 | - | - | |
| Cca02g00984 | 376 | PANTHER | RRNA BIOGENESIS PROTEIN RRP36 | 1 | 374 | - | - | |
| Cca02g00984 | 376 | MobiDBLite | consensus disorder prediction | 133 | 156 | - | - | |
| Cca02g00984 | 376 | MobiDBLite | consensus disorder prediction | 25 | 60 | - | - | |
| Cca02g00984 | 376 | MobiDBLite | consensus disorder prediction | 269 | 302 | - | - | |
| Cca02g00984 | 376 | PANTHER | ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) AMIDOTRANSFERASE SUBUNIT | 1 | 374 | IPR039300 | GO:0007142 | |
| Cca02g00984 | 376 | MobiDBLite | consensus disorder prediction | 11 | 156 | - | - | |
| Cca02g00984 | 376 | MobiDBLite | consensus disorder prediction | 353 | 376 | - | - | |
| Cca02g00984 | 376 | MobiDBLite | consensus disorder prediction | 102 | 126 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca02g00984 | Cca-Chr2 | 26103783 | 26105738 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca02g00984 | - | - | gmx:100805024 | 513.072 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca02g00984 | 02 | 26103783 | 26105738 | Cca02g00984 | 02 | 26103783 | 26105738 | ECH | |
| Cca02g00984 | 02 | 26103783 | 26105738 | Cca03g02239 | 03 | 43228857 | 43230507 | ECH | |
| Cca03g02239 | 03 | 43228857 | 43230507 | Cca02g00984 | 02 | 26103783 | 26105738 | PCT | |
| Cca03g03071 | 03 | 52133653 | 52136271 | Cca02g00984 | 02 | 26103783 | 26105738 | PCT |