Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02885 ATGTTTTTGGTCGATTGGTTTTATGGGATTCTAGCGTCGCTTGGGCTGTGGCAGAAGGAGGCCAAGATCTTATTCTTAGGCCTCGATAACGCCGGCAAAACCACCTTGCTTCACATGCTCAAAGATGAGAGACTAGTCCAGCATCAGCCTACCCAGTATCCAACCTCGGAGGAGTTGAGTATTGGGAAGATCAAATTTAAAGCTTTTGATCTAGGGGGCCATCAGATTGCTCGAAGAGTTTGGAAGGATTACTATGCCCAGGTAGATGCAGTGGTCTACTTGGTTGATGCATATGACAAGGAAAGATTTGCTGAATCAAAAAAGGAGTTGGATGCTCTACTATCTGATGAATCTTTAGCCAATGTCCCTTTCCTTATCCTTGGGAACAAAATAGATATTCCATATGCTGCCTCAGAAGAAGAGTTGCGCTACCATTTGGGCCTGACTAACTTCACCACTGGCAAGGGTAAGGTAAATTTGGCCGATTCAAATGTTCGTCCCATGGAGGTATTCATGTGCAGTATTGTGAAGAAAATGGGTTACGGGGATGGCTTCAAATGGCTTTCTCAGTACATCAAATAG 582 0.4433 MFLVDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAQVDAVVYLVDAYDKERFAESKKELDALLSDESLANVPFLILGNKIDIPYAASEEELRYHLGLTNFTTGKGKVNLADSNVRPMEVFMCSIVKKMGYGDGFKWLSQYIK 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02885 193 CDD Sar1 2 192 - -
Cca03g02885 193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 192 IPR027417 -
Cca03g02885 193 TIGRFAM small_GTP: small GTP-binding protein domain 19 138 IPR005225 GO:0005525
Cca03g02885 193 ProSiteProfiles small GTPase SAR1 family profile. 14 192 - -
Cca03g02885 193 PANTHER RE74312P 1 193 IPR006687 GO:0005525|GO:0006886
Cca03g02885 193 PANTHER GTP-BINDING PROTEIN SAR1A 1 193 - -
Cca03g02885 193 Pfam ADP-ribosylation factor family 8 192 IPR006689 GO:0003924|GO:0005525
Cca03g02885 193 ProSiteProfiles small GTPase Arf family profile. 14 192 - -
Cca03g02885 193 SMART arf_sub_2 4 193 - -
Cca03g02885 193 SMART sar_sub_1 4 192 IPR006689 GO:0003924|GO:0005525
Cca03g02885 193 PRINTS GTP-binding SAR1 protein signature 22 45 IPR006689 GO:0003924|GO:0005525
Cca03g02885 193 PRINTS GTP-binding SAR1 protein signature 50 74 IPR006689 GO:0003924|GO:0005525
Cca03g02885 193 PRINTS GTP-binding SAR1 protein signature 77 102 IPR006689 GO:0003924|GO:0005525
Cca03g02885 193 PRINTS GTP-binding SAR1 protein signature 122 143 IPR006689 GO:0003924|GO:0005525
Cca03g02885 193 PRINTS GTP-binding SAR1 protein signature 166 190 IPR006689 GO:0003924|GO:0005525
Cca03g02885 193 Gene3D - 1 193 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02885 Cca-Chr3 50166456 50169183 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02885 K07953 - egr:104456708 372.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02885 03 50166456 50169183 Cca02g01426 02 32803545 32806152 ECH
Cca03g02885 03 50166456 50169183 Cca03g02885 03 50166456 50169183 ECH
Cca11g02716 11 54520247 54522234 Cca03g02885 03 50166456 50169183 ECH
Cca08g01742 08 49408601 49411377 Cca03g02885 03 50166456 50169183 ECH