Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02716 ATGTTTCTTTTTGATTGGTTCTATGGAATTTTGGCGACCCTTGGTCTGTGGCAGAAGGAGGCGAAGATTTTATTCCTAGGGTTAGATAATGCTGGGAAGACCACTTTGCTTCATATGCTCAAAGACGAGAGATTAGTTCAGCATCAACCTACCCAGTATCCCACTTCAGAGGAGTTGAGTATTGGAAAGATAAAGTTCAAGGCTTTCGATTTGGGTGGCCACCAGATTGCTCGTAGGGTCTGGAGGGACTATTACGCCCAGGTGGATGCTGTAATCTACCTGGTTGATGCATTTGACAAGGAAAGATTTTCAGAATCAAAGAGGGAGCTGGATGCTCTTCTTTCTGATGAGTCATTAGCAAATGTGCCTTTCCTTATCTTGGGAAACAAGATTGACATACCTTATGCTGCCTCAGAGGATGAGTTACGTTATCACATGGGCCTCACTAACTTCACCACAGGCAAGGGCAAAGTTAATTTGGCTGACTCCAATGTTCGTCCTTTGGAGGTGTTCATGTGCAGTATTGTCCGGAAGATGGGATATGGTGAAGGCTTTCAGTGGCTCTCTCAGTACATTAAATAG 582 0.4433 MFLFDWFYGILATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWRDYYAQVDAVIYLVDAFDKERFSESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHMGLTNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGEGFQWLSQYIK 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02716 193 PRINTS GTP-binding SAR1 protein signature 22 45 IPR006689 GO:0003924|GO:0005525
Cca11g02716 193 PRINTS GTP-binding SAR1 protein signature 50 74 IPR006689 GO:0003924|GO:0005525
Cca11g02716 193 PRINTS GTP-binding SAR1 protein signature 77 102 IPR006689 GO:0003924|GO:0005525
Cca11g02716 193 PRINTS GTP-binding SAR1 protein signature 122 143 IPR006689 GO:0003924|GO:0005525
Cca11g02716 193 PRINTS GTP-binding SAR1 protein signature 166 190 IPR006689 GO:0003924|GO:0005525
Cca11g02716 193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 192 IPR027417 -
Cca11g02716 193 Gene3D - 1 193 IPR027417 -
Cca11g02716 193 ProSiteProfiles small GTPase Arf family profile. 14 192 - -
Cca11g02716 193 CDD Sar1 2 192 - -
Cca11g02716 193 SMART sar_sub_1 4 192 IPR006689 GO:0003924|GO:0005525
Cca11g02716 193 TIGRFAM small_GTP: small GTP-binding protein domain 19 135 IPR005225 GO:0005525
Cca11g02716 193 Pfam ADP-ribosylation factor family 8 192 IPR006689 GO:0003924|GO:0005525
Cca11g02716 193 ProSiteProfiles small GTPase SAR1 family profile. 14 192 - -
Cca11g02716 193 PANTHER GTP-BINDING PROTEIN SAR1A 1 193 - -
Cca11g02716 193 PANTHER RE74312P 1 193 IPR006687 GO:0005525|GO:0006886
Cca11g02716 193 SMART arf_sub_2 3 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02716 Cca-Chr11 54520247 54522234 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02716 K07953 - gmx:100811178 385.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02716 11 54520247 54522234 Cca11g02716 11 54520247 54522234 ECH
Cca11g02716 11 54520247 54522234 Cca02g01426 02 32803545 32806152 ECH
Cca11g02716 11 54520247 54522234 Cca03g02885 03 50166456 50169183 ECH