Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01742 ATGTTTCTTCTTGATTGGTTGTACGGAATTCTTGCAACCTTGGGTCTGTCACAAAAGGAGGCTAAGATCTTGTTCCTTGGTTTAGATAACGCTGGCAAGACCACTTTGCTTCAAATGCTCAAAGATGAGAGACTAGTTCAGCATCAACCCACTCAATTCCCAACTTCAGAGGAGTTGAATATTGGGAATATTAAATTCAAAGTCTTCGATTTGGGTGGCCACCAGATTGCTCGTAGAGTCTGGAGGGACTATTATGCTAAGGTTGATGCAGTGGTGTACGTGGTGGATGCACATGACAAGGAGAGGTTCCCAGAATCAAAAAAGGAGTTGAATGCTCTTCTATCTGATGACTCATTAGAAAATGTACCTGTTCTTGTACTAGGAAACAAGATTGACATAGTTGATGCTGCATCAGAAGAGGAGTTAAGGTATCATTTGGGCCTCACCAACTTCACTACAGGAAAAGGCATGGTCAATCTTAAGGACTCCAATATTCGGCCTCTAGAAGTGTTCATGTGCACTATTGCTCGCAAGATGGGGTTTGGAGAAGGCTTCAAGTGGCTCTCTCAGTACATCAAATAG 582 0.4278 MFLLDWLYGILATLGLSQKEAKILFLGLDNAGKTTLLQMLKDERLVQHQPTQFPTSEELNIGNIKFKVFDLGGHQIARRVWRDYYAKVDAVVYVVDAHDKERFPESKKELNALLSDDSLENVPVLVLGNKIDIVDAASEEELRYHLGLTNFTTGKGMVNLKDSNIRPLEVFMCTIARKMGFGEGFKWLSQYIK 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01742 193 PANTHER GTP-BINDING PROTEIN SAR1A 1 193 - -
Cca08g01742 193 SMART sar_sub_1 4 192 IPR006689 GO:0003924|GO:0005525
Cca08g01742 193 CDD Sar1 2 192 - -
Cca08g01742 193 Gene3D - 1 193 IPR027417 -
Cca08g01742 193 ProSiteProfiles small GTPase SAR1 family profile. 14 192 - -
Cca08g01742 193 SMART arf_sub_2 4 193 - -
Cca08g01742 193 ProSiteProfiles small GTPase Arf family profile. 14 192 - -
Cca08g01742 193 TIGRFAM small_GTP: small GTP-binding protein domain 19 141 IPR005225 GO:0005525
Cca08g01742 193 PANTHER RE74312P 1 193 IPR006687 GO:0005525|GO:0006886
Cca08g01742 193 Pfam ADP-ribosylation factor family 9 192 IPR006689 GO:0003924|GO:0005525
Cca08g01742 193 PRINTS GTP-binding SAR1 protein signature 22 45 IPR006689 GO:0003924|GO:0005525
Cca08g01742 193 PRINTS GTP-binding SAR1 protein signature 50 74 IPR006689 GO:0003924|GO:0005525
Cca08g01742 193 PRINTS GTP-binding SAR1 protein signature 77 102 IPR006689 GO:0003924|GO:0005525
Cca08g01742 193 PRINTS GTP-binding SAR1 protein signature 122 143 IPR006689 GO:0003924|GO:0005525
Cca08g01742 193 PRINTS GTP-binding SAR1 protein signature 166 190 IPR006689 GO:0003924|GO:0005525
Cca08g01742 193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 192 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01742 Cca-Chr8 49408601 49411377 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01742 K07953 - twl:120007589 326.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01742 08 49408601 49411377 Cca08g01742 08 49408601 49411377 ECH
Cca08g01742 08 49408601 49411377 Cca02g01426 02 32803545 32806152 ECH
Cca08g01742 08 49408601 49411377 Cca03g02885 03 50166456 50169183 ECH