Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02884 ATGAGTGAAGAAGCAAAGAACGAACGGCGAGTCCTGGTGGCGGTGGACGAAGGAGATGAGAGCATGTACGCTCTTTCTTGGAGCCTGAAGAACGTAGTTTTCCAAAATTCCAAAGATACCCTTATCCTTCTGTACGTGAAACCCCATCATGGGGTTTATTCCGCCTTAGATGCCACAGGCATACTCGATGAACCTCAAATTCCAGGGCATTCGTATTCGCCGCAAATAACCGCAGCCATCGAGAAGTATAGCCAAGAAGTCGCCGATTGCGTCTTACAGAAAGCCAAGAAATTGTGTAAAGATCTCCAAAACGTGAAGTTGGAAACAAGGGTCGAGAGTGGAGACCCGAGGGACGTGATCTGTGACATGTCTCAGAAATTGGGTGCTGATTTGCTGGTGATGGGTAGTCACGGCTTTGGAATCCTCAAGAGGTACCAACTTGGTTCAGCTTCTAGAGTCCTTTCTTTTTATGTTTAA 477 0.4696 MSEEAKNERRVLVAVDEGDESMYALSWSLKNVVFQNSKDTLILLYVKPHHGVYSALDATGILDEPQIPGHSYSPQITAAIEKYSQEVADCVLQKAKKLCKDLQNVKLETRVESGDPRDVICDMSQKLGADLLVMGSHGFGILKRYQLGSASRVLSFYV 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02884 158 PANTHER OS05G0357525 PROTEIN 3 152 - -
Cca03g02884 158 PRINTS Universal stress protein signature 144 158 IPR006015 -
Cca03g02884 158 PRINTS Universal stress protein signature 126 138 IPR006015 -
Cca03g02884 158 PRINTS Universal stress protein signature 8 26 IPR006015 -
Cca03g02884 158 CDD USP_Like 10 154 - -
Cca03g02884 158 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 9 152 - -
Cca03g02884 158 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 3 152 - -
Cca03g02884 158 Pfam Universal stress protein family 9 152 IPR006016 -
Cca03g02884 158 Gene3D HUPs 3 155 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02884 Cca-Chr3 50162278 50163386 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02884 - - ccaj:109797644 287.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02884 03 50162278 50163386 Cca03g02884 03 50162278 50163386 ECH
Cca02g01275 02 30872651 30874267 Cca03g02884 03 50162278 50163386 ECH
Cca03g02884 03 50162278 50163386 Cca02g01425 02 32800725 32802035 PCT