Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01425 ATGGCAGAAGACCAACGCCGGATTCTGGTGGCGGTTGATGAAGGCGAGGAGAGCATGTACGCTCTCTCATGGTGCCTCAAGAACCTCGTTTTCCAAAATTCCAAAGACACCCTTATTCTCCTCTACGTCAAGGCCCCTCGTGTCGTTTTTTCTGCCTTCGATGGCACAGGGTACTTGTTTTCCTCTGACATAGCGGCAACCATGGAGAGGTATGGCCAACAAGTTGCTGATGCTGTCTTGGAGAAAGCCAAGAAACTGTGTAACCATGTTGAAAATTTGGAGACGAGGGTAGAGAGTGGTGATCCAAGAGACGTGATCTGTCAAATGGTTCAAAAGTTGGGTGTTGATGTTTTAGTGATGGGAAGCCATGGTTATGGTCTCATTAAGAGGGCTTTCCTTGGAAGCGTTAGCAATCACTGTGCACAGAACGTGAAGTGCCCGGTTTTGATTGTGAAGAAGCCAAAACCAAGCGCCGGAGACATATAA 486 0.4794 MAEDQRRILVAVDEGEESMYALSWCLKNLVFQNSKDTLILLYVKAPRVVFSAFDGTGYLFSSDIAATMERYGQQVADAVLEKAKKLCNHVENLETRVESGDPRDVICQMVQKLGVDVLVMGSHGYGLIKRAFLGSVSNHCAQNVKCPVLIVKKPKPSAGDI 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01425 161 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 3 157 - -
Cca02g01425 161 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 6 154 - -
Cca02g01425 161 Pfam Universal stress protein family 6 152 IPR006016 -
Cca02g01425 161 Gene3D HUPs 1 160 IPR014729 -
Cca02g01425 161 PANTHER OS05G0357525 PROTEIN 3 157 - -
Cca02g01425 161 Coils Coil 76 96 - -
Cca02g01425 161 CDD USP_Like 7 151 - -
Cca02g01425 161 PRINTS Universal stress protein signature 5 23 IPR006015 -
Cca02g01425 161 PRINTS Universal stress protein signature 112 124 IPR006015 -
Cca02g01425 161 PRINTS Universal stress protein signature 130 152 IPR006015 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01425 Cca-Chr2 32800725 32802035 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01425 - - gmx:100305594 291.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02780 03 49171058 49172074 Cca02g01425 02 32800725 32802035 ECH
Cca02g01425 02 32800725 32802035 Cca02g01425 02 32800725 32802035 ECH
Cca03g02884 03 50162278 50163386 Cca02g01425 02 32800725 32802035 PCT