Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02860 ATGGATGTGTTAACAACATTAACTGCTGAGAAGCCAGTGGTGATCTTCAGCAAGAGCACTTGCTGCATGAGCCACACTGTGAAGGCTCTCATATGGAGCTTTGGTGCCAACGTTTCAGTTATTGAGCTTGACAAAATGCCAAGTGGCCAGCAAGTAGAGAGGGCCCTTGTTCAGCTAGGGTGCCACCCCAGTGTACCTGCAGTGTTCATAGGACAACAATTCATAGGTGGTGCTGATGAGATCATAAAACTCAACGTTCAGAACAAGCTTGCTCAATTGCTTCTCAGGGCCAAAGCTATTTTTATCTGA 309 0.4628 MDVLTTLTAEKPVVIFSKSTCCMSHTVKALIWSFGANVSVIELDKMPSGQQVERALVQLGCHPSVPAVFIGQQFIGGADEIIKLNVQNKLAQLLLRAKAIFI 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02860 102 TIGRFAM GlrX-like_plant: glutaredoxin-like family 6 101 IPR011905 -
Cca03g02860 102 Gene3D Glutaredoxin 2 101 - -
Cca03g02860 102 PANTHER GLUTAREDOXIN 1 102 IPR011905 -
Cca03g02860 102 PRINTS Glutaredoxin signature 13 31 IPR014025 -
Cca03g02860 102 PRINTS Glutaredoxin signature 58 71 IPR014025 -
Cca03g02860 102 PRINTS Glutaredoxin signature 72 85 IPR014025 -
Cca03g02860 102 CDD GRX_GRXh_1_2_like 12 93 - -
Cca03g02860 102 PANTHER MONOTHIOL GLUTAREDOXIN-S2 PROTEIN 1 102 - -
Cca03g02860 102 Pfam Glutaredoxin 13 75 IPR002109 -
Cca03g02860 102 ProSiteProfiles Glutaredoxin domain profile. 1 101 - -
Cca03g02860 102 SUPERFAMILY Thioredoxin-like 2 99 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02860 Cca-Chr3 49917821 49918563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02860 1 102 Miscellaneous Gene Families AT4G15690 48.039 2.44e-34 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02860 K03676 - gmx:100803979 181.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02860 03 49917821 49918563 Cca02g01200 02 29669824 29670141 PCT
Cca02g01199 02 29664324 29664849 Cca03g02860 03 49917821 49918563 PCT