Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01200 ATGGACGTGCTGGCAACTTTGACTGCTGACAAGCCGGTGGTGATCTTCAGCAAGAGCACTTGTAGCATTAGCCATTCTGTGCAGGCTCACATATGCAGCTTTGGTGCCAGCTATACAGTTATCGAGATTGACAAAATGGAAAATGGTCAGCAGATAGAAAGGGCACTGATACAGTTGGGTTGTCGCCCAACCGTACCAGCAGTGTTCATTGGACAACAACTTGTAGGTGGTGCTGATGAACTCATAAGCCTCAACGTCCAAAACAAGCTTGCCCAGTTGCTTTTAAGGGCTAGAGCTATATTTATCTGGAGTCCATAA 318 0.4654 MDVLATLTADKPVVIFSKSTCSISHSVQAHICSFGASYTVIEIDKMENGQQIERALIQLGCRPTVPAVFIGQQLVGGADELISLNVQNKLAQLLLRARAIFIWSP 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01200 105 SUPERFAMILY Thioredoxin-like 2 98 IPR036249 -
Cca02g01200 105 Gene3D Glutaredoxin 2 102 - -
Cca02g01200 105 PANTHER GLUTAREDOXIN 1 104 IPR011905 -
Cca02g01200 105 ProSiteProfiles Glutaredoxin domain profile. 1 101 - -
Cca02g01200 105 TIGRFAM GlrX-like_plant: glutaredoxin-like family 6 101 IPR011905 -
Cca02g01200 105 CDD GRX_GRXh_1_2_like 12 93 - -
Cca02g01200 105 PRINTS Glutaredoxin signature 13 31 IPR014025 -
Cca02g01200 105 PRINTS Glutaredoxin signature 58 71 IPR014025 -
Cca02g01200 105 PRINTS Glutaredoxin signature 72 85 IPR014025 -
Cca02g01200 105 Pfam Glutaredoxin 13 75 IPR002109 -
Cca02g01200 105 PANTHER MONOTHIOL GLUTAREDOXIN-S2 PROTEIN 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01200 Cca-Chr2 29669824 29670141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01200 1 102 Miscellaneous Gene Families AT4G15690 46.078 1.44e-30 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01200 K03676 - gmx:106794948 183.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01200 02 29669824 29670141 Cca02g01200 02 29669824 29670141 ECH
Cca03g02860 03 49917821 49918563 Cca02g01200 02 29669824 29670141 PCT