Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01199 ATGGACCTAATCACAGGCATGATTACTGAAAAACCTGTGGTGATCTTTAGCAAGAGCAGATGTTGCTTGAGCCACTCCATCACCTCACTGATTCGTAGCTTTGGGGCAAACCCTACTGTCTATGAGCTTGATGAAATGACAAATGGACAGCAGATAGAAAGGGAACTGCTTCAAATGGGGTGCCAGCCAAGTGTACCAACTGTGTTTATAGGACAACAATTCATTGGTGGGTCTAAGAGAGTCATGAGCCTGCATCTTAGGAATGAGTTGGTACCACTGCTCATAAATGCTAGGGCTATATGGATTTGA 309 0.4434 MDLITGMITEKPVVIFSKSRCCLSHSITSLIRSFGANPTVYELDEMTNGQQIERELLQMGCQPSVPTVFIGQQFIGGSKRVMSLHLRNELVPLLINARAIWI 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01199 102 ProSiteProfiles Glutaredoxin domain profile. 1 101 - -
Cca02g01199 102 PANTHER MONOTHIOL GLUTAREDOXIN-S2 PROTEIN 1 101 - -
Cca02g01199 102 Gene3D Glutaredoxin 2 101 - -
Cca02g01199 102 PRINTS Glutaredoxin signature 13 31 IPR014025 -
Cca02g01199 102 PRINTS Glutaredoxin signature 58 71 IPR014025 -
Cca02g01199 102 PRINTS Glutaredoxin signature 72 85 IPR014025 -
Cca02g01199 102 CDD GRX_GRXh_1_2_like 12 93 - -
Cca02g01199 102 PANTHER GLUTAREDOXIN 1 101 IPR011905 -
Cca02g01199 102 TIGRFAM GlrX-like_plant: glutaredoxin-like family 6 102 IPR011905 -
Cca02g01199 102 Pfam Glutaredoxin 13 75 IPR002109 -
Cca02g01199 102 SUPERFAMILY Thioredoxin-like 2 101 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01199 Cca-Chr2 29664324 29664849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01199 1 102 Miscellaneous Gene Families AT4G15690 55.882 8.74e-41 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01199 K03676 - gmx:100811394 186.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02665 03 47951515 47954153 Cca02g01199 02 29664324 29664849 PCT
Cca02g01199 02 29664324 29664849 Cca03g02860 03 49917821 49918563 PCT