Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02490 ATGCAGAGTGAGCAACAGAACAACCAGTTGGTAGTGCAGAATTCGGGGAGCCTTAGCTTCAGCAGCCACTTGTCCAAGGAAGATGAAGAGATGTCAAGGTCTGCTCTCTCCACCTTCAAAGCCAAGGAGGAAGAGATTGAAAGGAAGAAGATGGAGGTCAGAGAAAAGGTTCAGCTTCAGTTGGGTCGCGTCGAAGAAGAAACTAAACGCCTTGCAACCATTCGTGAGGAACTTGAAGCCCTGGCAGATCCAATGAGGAAAGAAGTTGCACTTGTTCGAAAAAGGATCGATTCCGTAAACAAAGAATTAAAGCCACTGGGTCACACCTGCCAGAAGAAGGAGAAAGAATACAAAGACGCCCTCGAAGCTTTTAATGAAAAGAACAGGGAAAAAGTACAGCTAATCACTAAGTTAATGGAGTTGGTGAGCGAAAGTGAAAGATTGAGGATGAAGAAGCTGGAGGAGCTGAGTAAGAACATAGATTCGATGCAATGA 495 0.4505 MQSEQQNNQLVVQNSGSLSFSSHLSKEDEEMSRSALSTFKAKEEEIERKKMEVREKVQLQLGRVEEETKRLATIREELEALADPMRKEVALVRKRIDSVNKELKPLGHTCQKKEKEYKDALEAFNEKNREKVQLITKLMELVSESERLRMKKLEELSKNIDSMQ 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02490 164 Coils Coil 110 130 - -
Cca03g02490 164 Pfam Transcriptional activator 13 162 IPR007033 -
Cca03g02490 164 MobiDBLite consensus disorder prediction 23 38 - -
Cca03g02490 164 MobiDBLite consensus disorder prediction 1 22 - -
Cca03g02490 164 MobiDBLite consensus disorder prediction 1 38 - -
Cca03g02490 164 Coils Coil 36 56 - -
Cca03g02490 164 PANTHER RAB6-INTERACTING PROTEIN GORAB 6 162 IPR007033 -
Cca03g02490 164 PANTHER EXPRESSED PROTEIN 6 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02490 Cca-Chr3 46120706 46122856 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02490 - - gmx:100499923 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02490 03 46120706 46122856 Cca02g01951 02 39065277 39067013 ECH
Cca03g02490 03 46120706 46122856 Cca03g02490 03 46120706 46122856 ECH
Cca03g02490 03 46120706 46122856 Cca04g00891 04 9409491 9412337 ECH