Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01951 ATGGGCCTAGTTTGTAGCAACACAGAGGAAATGCAGAAAATGAAGAACCTTGGGAGCATTGGAAGCAGTGGGAGGCTATCAACAGAAGAGTGTGAAGATGAGGAGATTTCAAAGATGGCCATTTCCACATTTCAATCTAAGGAAGAAGAGATTGAGAGGAAAAAGATGGAGGTGAGGGAGAAAGTTGAGCTTCAACTTGGTCGTGCTGAAGAAGAGACTAGGCGCTTGGCACACATTTGGGAAGAGCTTGAAGTGCTGGACGATCCAATGAGGAAGGAAGTTGCAATGGTACGCAAGAAGATTGACTTGGCTAACAGAGATTTAAAGCCACTGGGACTTAACTACCAGAAAAAGGAGAAAGAGTATAAAGAAGCTTTGGAAGCTTTCAACGAAAAGAACAAAGAGAAGGCTCATCTAGTAGCCACTCTAGTTGAGATGCTTACTGAGAGTGAGAGACTGAGGATGAAGAAACTGGAAGAGCTATGCAAGACCATAGAGTCTATGTCGCTCAAACCATAA 519 0.4355 MGLVCSNTEEMQKMKNLGSIGSSGRLSTEECEDEEISKMAISTFQSKEEEIERKKMEVREKVELQLGRAEEETRRLAHIWEELEVLDDPMRKEVAMVRKKIDLANRDLKPLGLNYQKKEKEYKEALEAFNEKNKEKAHLVATLVEMLTESERLRMKKLEELCKTIESMSLKP 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01951 172 Coils Coil 41 61 - -
Cca02g01951 172 PANTHER RAB6-INTERACTING GOLGIN (DUF662) 11 168 - -
Cca02g01951 172 Coils Coil 115 135 - -
Cca02g01951 172 Pfam Transcriptional activator 15 167 IPR007033 -
Cca02g01951 172 PANTHER RAB6-INTERACTING PROTEIN GORAB 11 168 IPR007033 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01951 Cca-Chr2 39065277 39067013 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01951 - - gmx:100794044 299.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02490 03 46120706 46122856 Cca02g01951 02 39065277 39067013 ECH
Cca02g01951 02 39065277 39067013 Cca02g01951 02 39065277 39067013 ECH