Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00891 ATGGCAACACCAAAACAGTCCTATGagcagcagcagcagcaacaacaacaacaACCAAATGTGCAGCGAGTGAGGAACTCAGGGATGATCAACTGCAACCAGAGTCCAATGAGGGATGACAAGGAAGAGGAGATGTCAAGATCAGCTTTGGCAATGTTCAGAGCAAAGGAAGAAGAAATTGAGAGGAGAAAAATGGAGGTGAGGGATAAGGTCCATGCTTATCTTGGTCGAGTTGAGGAGGAAACAAAACGCTTGGCTGAGATTAGAGAAGAACTTGAGGGTCTCACAGATCCGTTGAGGAAGGAAGTTTCAATAGTTCGAAAGAAGATAGACAGTGTTAACAAAGAGTTAAAGCCACTGGGCCAAACCTGCCAGAGAAAGGAGAGAGAATACAAGGAAGCCCTTGAAGCTTTCAATGAGAAAAACAAGGAAAAAGCTCAACTTGTTACTAAATTAATGGAGCTGGTGACTGAAAGTGAGAGGTTGAGGATGAAGAAGCTGGAGGAGTTAAGCAAAAACGTAGATACCCTTCACTGA 537 0.4134 MATPKQSYEQQQQQQQQQPNVQRVRNSGMINCNQSPMRDDKEEEMSRSALAMFRAKEEEIERRKMEVRDKVHAYLGRVEEETKRLAEIREELEGLTDPLRKEVSIVRKKIDSVNKELKPLGQTCQRKEREYKEALEAFNEKNKEKAQLVTKLMELVTESERLRMKKLEELSKNVDTLH 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00891 178 Coils Coil 71 91 - -
Cca04g00891 178 Pfam Transcriptional activator 25 176 IPR007033 -
Cca04g00891 178 Coils Coil 124 144 - -
Cca04g00891 178 MobiDBLite consensus disorder prediction 1 48 - -
Cca04g00891 178 PANTHER - 12 177 - -
Cca04g00891 178 PANTHER RAB6-INTERACTING PROTEIN GORAB 12 177 IPR007033 -
Cca04g00891 178 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00891 Cca-Chr4 9409491 9412337 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00891 - - ccaj:109798987 331.257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00891 04 9409491 9412337 Cca04g00891 04 9409491 9412337 ECH
Cca03g02490 03 46120706 46122856 Cca04g00891 04 9409491 9412337 ECH