Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02219 ATGATGGCAAGCATAACAAAGGGAAGAGCAGATGTGAACTCAAGAAAAAGATTGGTCATAACTGTGTTGGTTTTGGTGATTGTTGGTGCTTTCTTCTACTTTTATTCTCAGAGTAATGATTCATCTGAATCTCCTGTTGAGTATGGTGATAAATCTTTAAAACACTTTGGTTTGGGAGGGGACAAAGATGACGATGAATCTTCCTCCATACTTGGAGGAGGAGAGGACAGTGTCATACCAAAGAGCATTCCAGTCTGTGATGATCGTCTATCAGAGCTGATTCCTTGTCTGGACAGAAACCTAATATACCAAACAAGGTTGAAGCTTGATTTATCTTTGATGGAGCACTATGAGAGACACTGCCCTATACCTGAGAGGCGTTGTAATTGTTTAATTCCTCCTCCTCCCGGGTACAAGATTCCAATAAAGTGGCCCAAAAGCAGAGACCAGGTATGGAAGGCAAATATACCTCATACACATCTTGCAACTGAAAAATCTGACCAGAATTGGATGGTTGTGAAAGGTGAAAAAATAGTTTTTCCTGGTGGAGGAACCCACTTCCATTATGGTGCTGATAAATACATTGCCTCAATCTCTAATATGCTCAATTTTCCAAACAATAATATAAACAATGGGGGAAGAGTCAGGTCTGTTCTTGATGTTGGTTGTGGTGTTGCTAGCTTTGGAGGATATCTTCTTTCTTCTGATGTGATAGCAATGTCATTGGCACCAAATGATGTTCATCAAAATCAAATTCAGTTTGCCTTAGAGAGAGGAATTCCAGCATATCTTGGAGTGTTAGGGACCCTAAGACTCCCTTATCCAAGTAGATCTTTTGAATTTGCTCATTGTTCTCGCTGTAGAATTGATTGGCTTCAGAGAGATGGTATACTTCTCCTTGAGCTGGATAGGTTACTGAGGCCAGGAGGTTATTTCGCGTACTCATCTCCTGAAGCCTATGCACAGGATGAAGAGGATAGGAGAATTTGGAAAGAAATGAGTGCTCTTGTGGAGAGGATGTGCTGGAAAATAGCTGCCAAGAGGAATCAGACTGTTATTTGGGTCAAGCCTCTGACAAATAGCTGCTACTTAAAGAGATTGCCTGGAACTCAGCCTCCACTCTGCAGATCTGATGATGATCCTGATTCTGTTTGGGGAGTTAAAATGAAAACTTGCATTTCACGCTATTCAGATCaaatgcacaaagcaaaaggaagtggtttggctccttggccagctagattgactactccaccacctcgtctagcagaaattcagtattctactgaaatgtttgagaaggacatggaagtttggcaacaacgagttcataattactGGAGCAAGCTAAGCAGTAAGATTAAGCCTGACACAATTCGGAATGTGATGGATATGAAGGCAAATTTGGGTTCATTTGCGGCGGCTTTGAAGGACAAAGATGTTTGGGTCATGAATGTGGTGCCAGAAAATGGACCAGAAACTCTCAAGATAATATACGACAGAGGACTGATAGGAACAGTTCACAACTGGTGTGAAGCTTTTTCAACCTACCCTCGTACGTATGATCTACTCCATGCATGGACTGTATTTTCTGATATTATTAACAAAGAATGCAGTCCAGAAGATTTATTAATTGAGATGGATAGAATCCTGAGACCAAAAGGTTTCATCATTGTCCATGATAAGCGGTCAGTGATAGAGTATATAAAGAAATACTTGTCAGCATTACACTGGGAGGCTGTGACCATGTATGATGTAGATCAAGATCAGGATGATGCCGTATTTATAATTCAAAAGAAGATGTGGCTCACAAGTCATAGCATCCAGGTTTCAGAATAG 1839 0.3763 MMASITKGRADVNSRKRLVITVLVLVIVGAFFYFYSQSNDSSESPVEYGDKSLKHFGLGGDKDDDESSSILGGGEDSVIPKSIPVCDDRLSELIPCLDRNLIYQTRLKLDLSLMEHYERHCPIPERRCNCLIPPPPGYKIPIKWPKSRDQVWKANIPHTHLATEKSDQNWMVVKGEKIVFPGGGTHFHYGADKYIASISNMLNFPNNNINNGGRVRSVLDVGCGVASFGGYLLSSDVIAMSLAPNDVHQNQIQFALERGIPAYLGVLGTLRLPYPSRSFEFAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDRRIWKEMSALVERMCWKIAAKRNQTVIWVKPLTNSCYLKRLPGTQPPLCRSDDDPDSVWGVKMKTCISRYSDQMHKAKGSGLAPWPARLTTPPPRLAEIQYSTEMFEKDMEVWQQRVHNYWSKLSSKIKPDTIRNVMDMKANLGSFAAALKDKDVWVMNVVPENGPETLKIIYDRGLIGTVHNWCEAFSTYPRTYDLLHAWTVFSDIINKECSPEDLLIEMDRILRPKGFIIVHDKRSVIEYIKKYLSALHWEAVTMYDVDQDQDDAVFIIQKKMWLTSHSIQVSE 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02219 612 PANTHER METHYLTRANSFERASE PMT1-RELATED 10 610 - -
Cca03g02219 612 Gene3D Vaccinia Virus protein VP39 208 353 IPR029063 -
Cca03g02219 612 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 130 353 IPR029063 -
Cca03g02219 612 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 10 610 IPR004159 GO:0008168
Cca03g02219 612 Gene3D Vaccinia Virus protein VP39 423 595 IPR029063 -
Cca03g02219 612 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 421 576 IPR029063 -
Cca03g02219 612 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 92 599 IPR004159 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02219 Cca-Chr3 42989741 42993396 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02219 - - gmx:100805403 1101.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02219 03 42989741 42993396 Cca03g02219 03 42989741 42993396 ECH
Cca03g02219 03 42989741 42993396 Cca02g00068 02 1159885 1166112 PCT
Cca02g01001 02 26391230 26395558 Cca03g02219 03 42989741 42993396 PCT