Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00068 ATGTCGAGGGGAAGACCTGATGGATCTAAGAAGCGTTTAATTGCTTCCGTTTGTGGTGCGGCAATCTTTCTTGGTTTTATATATGTGTACCATGGATCCATATTTGGTTCTCAGAATGGTGGTTCAGCTGCTCTTGAATATGGCAGCAAGTCATTGAAAAGACTTGGTGCAACATACTTGGGTGCAGAAGATGATGCTGATAGCAAGCAAGATGAATCTTCATCAAGTCTTGTGCAGGGAGATGGTGAAGATGATATTATACCAAAGAGTTTCCCTGTTTGTGATGATCGCCATTCTGAGTTGATTCCTTGCTTAGATAGACATCTTATCTATCAAATGAGATTAAAACTGGATCTTTCTTTGATGGAACACTATGAGAGACATTGTCCGCCTGCAGAAAGGAGATTCAATTGTTTGATTCCTCCTCCGGCAGGATACAAGGTCCCTATTAAGTGGCCACAGAGCAGAGATGAAGTGTGGAAAGCAAACATACCACACACTCACCTTGCACATGAGAAGTCTGACCAGAACTGGATGGTTGTAAAAGGTGAAAAGATAGTGTTTCCTGGAGGAGGGACACATTTTCACTATGGAGCTGACAAGTACATTGCATCAATTGCAAATATGCTCAATTTTTCAAACGATAATCTTAATAATGAAGGAAGACTGCGGACAGTGCTTGATGTTGGCTGCGGTGTTGCGAGTTTTGGAGCTTATCTTCTTTCATCTGATATCATTGCAATGTCCGTGGCACCTAATGATGTGCACCAAAATCAAATTCAGTTTGCTCTAGAAAGAGGAATTCCTGCATATCTAGGTGTTTTGGGAACTAAGAGACTCCCTTACCCTAGCAGATCTTTTGAACTTGCACACTGTTCTCGATGTCGGATTGATTGGCTTCAAAGGGATGGAATACTACTACTTGAGCTAGACCGGTTGCTTAGGCCAGGAGGTTATTTTGCATACTCATCTCCAGAAGCATATGCTCAGGATGAGGAGGATCGAAGGATATGGAGAGAAATGAGTACCCTCGTGGCACGTATGTGTTGGAGAATCGCTGCAAAGAGGTTTCAAACTGTCATCTGGCAAAAACCTCTTACAAATGAATGCTATATGCAGAGAGAACCCGGCACTCGCCCTCCTCTTTGCCAGACTGATGATGACCCAGATGCAATTTGGGGAGTGAATATGGAAGCCTGCATAACACCTTACTCAGACCATGACAATAGAGCCAAGGGTAGTGGATTGGCTCCATGGCCTGCAAGATTGACTACTCCCCCTCCTAGATTAGCTGACTTTGGCTATTCAAATGAAATGTTTGAAAAGGATACGGAACTGTGGCAAGGAAGAGTTGAGAATTACTGGAATCTGTTGGGTCCAAAAATTTCATCAAACACGTTGAGGAATGTGATGGACATGAAAGCAAGCATGGGTTCATTTGGAGCTGCTTTTAGAGGCAAGGATATTTGGGTGATGAATGTTGTACCTCGTGATGGACCAAACACACTTAAGCTTATATACGACAGAGGCCTCATAGGGTCTATCCATGACTGGTGTGAAGCATATTCAACATATCCTCGGACTTATGATTTACTCCATGCATGGACCGTGTTTTCTGACATTGAAAAGAGAGATTGCAGTCCAGTAGATCTATTGATTGAAATGGACCGTATGCTTAGGCCTACTGGTTTCATCATCATAAGGGATAAGCAACATGTGATTGATTTCGTCAAGAAGTACCTAACAGCATTGCACTGGGAAGCAGTTGCAACTGCAGATTCCAGTTCTGAATCTGACCAAGATAACAATGAAGTTATTTTTGTCATCCAGAAGAAATTGTGGCTCACCACTGAAAGCTTTAGGAATACAGAATGA 1875 0.4261 MSRGRPDGSKKRLIASVCGAAIFLGFIYVYHGSIFGSQNGGSAALEYGSKSLKRLGATYLGAEDDADSKQDESSSSLVQGDGEDDIIPKSFPVCDDRHSELIPCLDRHLIYQMRLKLDLSLMEHYERHCPPAERRFNCLIPPPAGYKVPIKWPQSRDEVWKANIPHTHLAHEKSDQNWMVVKGEKIVFPGGGTHFHYGADKYIASIANMLNFSNDNLNNEGRLRTVLDVGCGVASFGAYLLSSDIIAMSVAPNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRLLRPGGYFAYSSPEAYAQDEEDRRIWREMSTLVARMCWRIAAKRFQTVIWQKPLTNECYMQREPGTRPPLCQTDDDPDAIWGVNMEACITPYSDHDNRAKGSGLAPWPARLTTPPPRLADFGYSNEMFEKDTELWQGRVENYWNLLGPKISSNTLRNVMDMKASMGSFGAAFRGKDIWVMNVVPRDGPNTLKLIYDRGLIGSIHDWCEAYSTYPRTYDLLHAWTVFSDIEKRDCSPVDLLIEMDRMLRPTGFIIIRDKQHVIDFVKKYLTALHWEAVATADSSSESDQDNNEVIFVIQKKLWLTTESFRNTE 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00068 624 Gene3D Vaccinia Virus protein VP39 196 371 IPR029063 -
Cca02g00068 624 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 126 381 IPR029063 -
Cca02g00068 624 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 4 622 IPR004159 GO:0008168
Cca02g00068 624 MobiDBLite consensus disorder prediction 63 83 - -
Cca02g00068 624 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 100 611 IPR004159 GO:0008168
Cca02g00068 624 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED 4 622 - -
Cca02g00068 624 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 439 577 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00068 Cca-Chr2 1159885 1166112 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00068 - - gmx:100780043 1200.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02219 03 42989741 42993396 Cca02g00068 02 1159885 1166112 PCT