Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01001 ATGGCCAGAGGAAGAGCAGATGGGAAACCGAGAAAGCGGTTGGTCGCAACTGTGTTAGTTTTAGTGATTGTTGGTGCTTTATTTTATCTGAATTCTAGGGAAAGTGGTTCATCTTCTATTGAGCATGGTAGCAAATCTTTACAATTTGGAGATGAGAGTGCTATACCGAAGACCATTCCAGTCTGTGATGATCGTCACTCGGAGCTAATTCCATGTCTAGACAGAAATTTCATATACCAGACAAGATTGAAGCTTGATCTGACTTTGATGGAGCACTATGAGCGACACTGCCCAATGCCCGAGAGGCGTTACAATTGTTTGATTCCCCCTCCTCCAGGGTACAAGATTCCAATCAAGTGGCCCAAAAGCAGAGATCAGGTATGGAGGGCAAATATACCTCATACCCATCTTGCAACTGAGAAATCTGACCAGAGATGGATGGTTGTAAAAGGTGAAAAGATAGTTTTTCCTGGTGGAGGAACCCACTTTCACTACGGTGCTGACAAATATATTGCATCAGTTGCCAATATGCTCAACTTTCCAGACAATAATATAAACAATGGAGGGAGACTTCGCAATGTTTTTGATGTTGGCTGTGGTGTCGCAAGCTTTGGAGGATATCTTCTTTCTTCTAATGTAATAGCAATGTCACTAGCACCAAATGATGTTCATGAAAACCAAATACAGTTTGCTTTAGAAAGAGGAATTCCAGCATATCTTGGTGTCTTGGGGACACTAAGACTCCCTTACCCTAGTAGATCTTTTGAACTTGCTCATTGTTCTCGTTGTAGAATTGATTGGCTTCAAAGAGATGGCATACTTCTTCTTGAGCTAGATAGGATACTCAGGCCAGGAGGCTACTTTGCCTACTCATCTCCTGAAGCTTATGCTCAGGATGAAGAGGATCGCAGAATATGGAGAGAAATGAATGCTCTTGTAGAACGGATGTGTTGGAAAATAGCTGCTAAAAAGAACCAGACTGTCATATGGGTCAAGCCTCTTACAAATGACTGTTACCTTAAAAGAGAGCCTGATACTCAGCCTCCGCTTTGCAGCCCCGATGATGATCCTGATGCTGTTTGGAAAGTTAAAATGCAAGCTTGCATCACACGTTACTCTGATCAGATGCACAGGATAAAAGGAAGTGGTTTGGCTCCTTGGCCAGCTCGATTGACTACTCCACCTCCTCGTCTTGCTGACTTTAACTATTCTACTGCAATGTTTGAAACAGACATGGAATATTGGCAAAAAGAAGTTGCTAATTACTGGAACATGCTAGGGAATAAAATTAAGCCCGACACAATTCGGAATGTGATGGACATGAAGGCAAATTTGGGTTCATTTGCAGCTGCTTTGAAGGACAAAGATGTTTGGGTTATGAATGTGGTGCCAGAAAATGGACCAAACACTCTCAAGATCATCTATGACAGAGGGCTATTAGGAACAGTTCATAACTGGTGTGAAGCATTTTCAACCTACCCACGAACTTATGACTTGCTCCATGCGTGGACTATATTTTCTGATATCATTGAGAGAGAATGCAGTCCAGAGGATTTATTGATTGAGATGGACAGAATCCTGAGGCCAAAAGGCTTCATCATTGTCCATGATAAGCGATCAGTGGTGTTGTCTATAAAGAAGTTCTTGCCAGCACTGCACTGGGTTCAAGTGGCCATATCTAATGTAGACCAAGATTCAGATCGAGGCAATGATGATGATAATACAGTGTTGATAATTCAGAAAAAGATTTGGCTGACAAGTGAGAGCATCCGGGTCTCAGAATAA 1785 0.4218 MARGRADGKPRKRLVATVLVLVIVGALFYLNSRESGSSSIEHGSKSLQFGDESAIPKTIPVCDDRHSELIPCLDRNFIYQTRLKLDLTLMEHYERHCPMPERRYNCLIPPPPGYKIPIKWPKSRDQVWRANIPHTHLATEKSDQRWMVVKGEKIVFPGGGTHFHYGADKYIASVANMLNFPDNNINNGGRLRNVFDVGCGVASFGGYLLSSNVIAMSLAPNDVHENQIQFALERGIPAYLGVLGTLRLPYPSRSFELAHCSRCRIDWLQRDGILLLELDRILRPGGYFAYSSPEAYAQDEEDRRIWREMNALVERMCWKIAAKKNQTVIWVKPLTNDCYLKREPDTQPPLCSPDDDPDAVWKVKMQACITRYSDQMHRIKGSGLAPWPARLTTPPPRLADFNYSTAMFETDMEYWQKEVANYWNMLGNKIKPDTIRNVMDMKANLGSFAAALKDKDVWVMNVVPENGPNTLKIIYDRGLLGTVHNWCEAFSTYPRTYDLLHAWTIFSDIIERECSPEDLLIEMDRILRPKGFIIVHDKRSVVLSIKKFLPALHWVQVAISNVDQDSDRGNDDDNTVLIIQKKIWLTSESIRVSE 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01001 594 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 68 581 IPR004159 GO:0008168
Cca02g01001 594 Gene3D Vaccinia Virus protein VP39 164 337 IPR029063 -
Cca02g01001 594 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 106 323 IPR029063 -
Cca02g01001 594 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 1 48 IPR004159 GO:0008168
Cca02g01001 594 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 50 592 IPR004159 GO:0008168
Cca02g01001 594 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 399 540 IPR029063 -
Cca02g01001 594 PANTHER METHYLTRANSFERASE PMT3-RELATED 1 48 - -
Cca02g01001 594 PANTHER METHYLTRANSFERASE PMT3-RELATED 50 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01001 Cca-Chr2 26391230 26395558 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01001 - - gmx:100784179 1114.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01001 02 26391230 26395558 Cca02g01001 02 26391230 26395558 ECH
Cca02g01001 02 26391230 26395558 Cca03g02219 03 42989741 42993396 PCT