Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02193 ATGGCCTTCTCTTCTTTTCTCGGCAGAGTCCTCTTCGCTTCGCTCTTCATCCTCTCCGCTTACCAAGAATTTAGTGCCTATGGAGTTGATGGGGGACCCGCAGCAAAAGCACTCAGACCGAAGTTTGATGCCTTTACACATCAAGTACATTCTAAAGTTGGCTTCCAACTTCCAGATATTGATATGAAATTTTTAGTTGCTGGGGCTATTGCTCTCAAGGGCATTGGAGGGATTCTATTCATACTCGGCAGCTCTTTTGGAGCTTTCCTTTTGCTTTTGCATCAAATGATTGCTACTCCGATACTGTATGATTTCTACAATTATGACAGCGAGGacaaagaatttattcagcttttcatcaaatttactcagAATATGGCCCTCTTCGGGGCTTTGTTGTTTTTTATTGGGATGAAAAACTCCATTCCTAGAAGGCAACACAAGAAGAAGGCTCCCAAAACCAAAACCTATTAG 474 0.3987 MAFSSFLGRVLFASLFILSAYQEFSAYGVDGGPAAKALRPKFDAFTHQVHSKVGFQLPDIDMKFLVAGAIALKGIGGILFILGSSFGAFLLLLHQMIATPILYDFYNYDSEDKEFIQLFIKFTQNMALFGALLFFIGMKNSIPRRQHKKKAPKTKTY 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02193 157 PANTHER - 1 157 - -
Cca03g02193 157 Pfam HR-like lesion-inducing 1 138 IPR008637 -
Cca03g02193 157 PANTHER HR-LIKE LESION-INDUCING PROTEIN 1 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02193 Cca-Chr3 42659397 42662976 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02193 - - gmx:100500514 265.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02193 03 42659397 42662976 Cca02g00093 02 1741045 1743049 PCT
Cca02g01042 02 27217384 27219901 Cca03g02193 03 42659397 42662976 PCT