Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01837 ATGAAGGTGGTGTTTGCAAGTGTGCTTCTTGTGTGCCTTGTCCTAAGCTCCTCATTCTTGGAAATCTCAATGGCTGGTTCTGATTTATGTGACTCAAAGTGTGGACAGAGGTGTGCGAAAGCAGGGGTTAAGGACAGATGCTTGAAGTTCTGCGGGATCTGCTGTGAGAAGTGCAAGTGTGTGCCATCTGGGACTTACGGAAACAAGCACGAGTGTCCTTGCTACAGGGACTTGAAGAACTCAAAGGGCAAGGACAAATGCCCTTAA 267 0.4794 MKVVFASVLLVCLVLSSSFLEISMAGSDLCDSKCGQRCAKAGVKDRCLKFCGICCEKCKCVPSGTYGNKHECPCYRDLKNSKGKDKCP 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01837 88 PANTHER EXTENSIN, PROLINE-RICH PROTEIN 1 88 - -
Cca03g01837 88 Pfam Gibberellin regulated protein 30 88 IPR003854 -
Cca03g01837 88 PANTHER GIBBERELLIN REGULATED PROTEIN 1 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01837 Cca-Chr3 37719538 37720228 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01837 - - gmx:100306110 161.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01837 03 37719538 37720228 Cca02g02515 02 46354344 46355255 ECH
Cca03g01837 03 37719538 37720228 Cca03g01837 03 37719538 37720228 ECH
Cca05g00117 05 2689208 2690948 Cca03g01837 03 37719538 37720228 PCT