Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00117 ATGATGAAGAAGGTAACATTTGCAGCGTTGCTACTTGTGTGCCTTGTTCTCAGCTCCTCCTTGTTCCAACTCTCAATGGCTCGTTCTGGTTTCTGTGACTCCAAGTGCGCAAAGAGGTGCGCAAAAGCTGGGATGAAGGACAGGTGCATGAGGTTCTGCGGGATCTGCTGCATCAAGTGCAAGTGTGTGCCATCTGGGACTTATGGGAACAAGCACGAGTGCCCTTGTTACAGGGACATCAAGAATTCCAAGGGCAAGCCAAAATGCCCTTAA 273 0.4982 MMKKVTFAALLLVCLVLSSSLFQLSMARSGFCDSKCAKRCAKAGMKDRCMRFCGICCIKCKCVPSGTYGNKHECPCYRDIKNSKGKPKCP 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00117 90 PANTHER GIBBERELLIN REGULATED PROTEIN 5 90 - -
Cca05g00117 90 Pfam Gibberellin regulated protein 31 90 IPR003854 -
Cca05g00117 90 PANTHER EXTENSIN, PROLINE-RICH PROTEIN 5 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00117 Cca-Chr5 2689208 2690948 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00117 - - gmx:100500113 162.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00117 05 2689208 2690948 Cca03g01837 03 37719538 37720228 PCT