Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02212 ATGAATAAAATTGTGCTAAAGGTGGAACTACAGGATGACAAAATTAAGAAAAAAGCCATGAAAGCAGTCTCCAATATTTCAGGGGTTGAATCAGTCTCTATGGATATGAAAGACCAGGAATTGACCTTAACTGGAGACATGGACCCCGTGGTTGTGGTGGACAAGCTGAGGAAACTGTGTTACACTGAGATACTCTCGGTTGGACCAGCCAAGGAAAAGAAGCCAGAGACCCCAGAACTAGAAGATCAAAATCAGTACATGCCTGGTATTGTGATGGTCTGCGAAGCCTATCATAATCAGATGAGCCAACCACATTATTATTACACAAGTGTGGAAGAGAATCCTAATCCCTGTGTCATTTGCTAA 366 0.4208 MNKIVLKVELQDDKIKKKAMKAVSNISGVESVSMDMKDQELTLTGDMDPVVVVDKLRKLCYTEILSVGPAKEKKPETPELEDQNQYMPGIVMVCEAYHNQMSQPHYYYTSVEENPNPCVIC 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02212 121 Gene3D - 1 73 - -
Cca02g02212 121 PANTHER ION-BINDING PROTEIN, PUTATIVE-RELATED 1 121 - -
Cca02g02212 121 Pfam Heavy-metal-associated domain 7 60 IPR006121 GO:0046872
Cca02g02212 121 SUPERFAMILY HMA, heavy metal-associated domain 4 62 IPR036163 GO:0046872
Cca02g02212 121 PANTHER COPPER TRANSPORT PROTEIN FAMILY-RELATED 1 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02212 Cca-Chr2 42641076 42642065 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02212 - - gmx:100793345 159.073
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02212 02 42641076 42642065 Cca02g02212 02 42641076 42642065 ECH
Cca08g00725 08 13689608 13690504 Cca02g02212 02 42641076 42642065 PCT
Cca02g02212 02 42641076 42642065 Cca08g00726 08 13726069 13727478 PCT