Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01470 ATGTCTCACACGCCACAAACCCTAGATTCCGACGAGGTAGctcctcccaccgccaccgccaccgccacccaaacccccgatgcccccccctccaccctcctccacctctccttcaaccaggactccggctgcttcgccgccgccaccgaccacggcttccgcatctacaactgcgaccccttccgcgagatcttccgccgcgacttcggccccggcggcggcgtgggcctggtCCACATGCTCTTCCGCTGCAACATCCTGGCCTTCGTGGGCGGCGGCTCCGACCCCCGGTACCCGCCGAACAAGGTGATGATCTGGGACGACCACCAGTCCCGGTGCATCGGCGAGCTCTCCTTCCGGTCGGAGGTGAAGGGCGTCCGTCTCCGGCGCGACCGCATCGTGGTGGTCCTGGCCCACAAGATCTTCGTGTACAATTTCGCCGATCTCAAGGTGCTTCACCAAATTGAGACTATTGCTAACCCTAAGGGCCTCTGCGACCTCTCTCACGTTTCCGCCACCATGGTGTTGGTGTGCCCTGGCCTGCAGAAGGGCCAGGTTAGGGTTGAGCACTACGCCTCCAAGAGGACCAAGTTCATCATGGCTCATGATTCCCGAATTGCCTCCTTCGCCCTCACTCACGATGGACGCTTGCTCGCCACCGCCAGCTCCAAGGGCACCCTCGTTAGGCTCTTCAACACCCTCGATGGTTCCTTGCTCCAAGAGGTACGGAGGGGTGCAGACAGAGCAGAGATATACAGCCTTGCTTTCTCTCCCACTGCACAGTGGCTGGCTGTCTCAAGTGACAAGGGGACCGTTCATGTTTTCAACCTAAAGGTTGATTCTGGACTGTTGGGGCATGACAGATCGCATGGTACTTCTGAGCCTAATGCGGCTAGCCCCACTGCAGTTTCGTCTCTTTCATTTATTAAAGGTGTGCTACCTAAGTATTTTAGCTCAGAGTGGTCTGTAGCTCAATTTCGCTTGCAAGAAGGTTTGCAGTATATTGTTGCATTTGGCCATCAAAAGAATACAATTGTAATACTTGGCATGGATGGCAGCTTCTATCGATGTCAGTTTGATTCTGCGAACGGAGGAGAGATGACCCAACTTGAACATTACAACTTCCTAAAGCCAGAAGAGACATTCTAG 1149 0.4447 MSHTPQTLDSDEVAPPTATATATQTPDAPPSTLLHLSFNQDSGCFAAATDHGFRIYNCDPFREIFRRDFGPGGGVGLVHMLFRCNILAFVGGGSDPRYPPNKVMIWDDHQSRCIGELSFRSEVKGVRLRRDRIVVVLAHKIFVYNFADLKVLHQIETIANPKGLCDLSHVSATMVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIASFALTHDGRLLATASSKGTLVRLFNTLDGSLLQEVRRGADRAEIYSLAFSPTAQWLAVSSDKGTVHVFNLKVDSGLLGHDRSHGTSEPNAASPTAVSSLSFIKGVLPKYFSSEWSVAQFRLQEGLQYIVAFGHQKNTIVILGMDGSFYRCQFDSANGGEMTQLEHYNFLKPEETF 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01470 382 Pfam WD domain, G-beta repeat 245 276 IPR001680 GO:0005515
Cca02g01470 382 SMART WD40_4 192 232 IPR001680 GO:0005515
Cca02g01470 382 SMART WD40_4 19 57 IPR001680 GO:0005515
Cca02g01470 382 SMART WD40_4 235 276 IPR001680 GO:0005515
Cca02g01470 382 MobiDBLite consensus disorder prediction 1 30 - -
Cca02g01470 382 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 16 382 - -
Cca02g01470 382 Gene3D - 33 372 IPR015943 GO:0005515
Cca02g01470 382 SUPERFAMILY WD40 repeat-like 28 278 IPR036322 GO:0005515
Cca02g01470 382 PANTHER AUTOPHAGY-RELATED PROTEIN 18A-LIKE ISOFORM X1 16 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01470 Cca-Chr2 33323437 33326675 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01470 K22991 - gmx:100787427 686.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02847 03 49791853 49795234 Cca02g01470 02 33323437 33326675 ECH
Cca02g01470 02 33323437 33326675 Cca02g01470 02 33323437 33326675 ECH
Cca03g02098 03 41274168 41278032 Cca02g01470 02 33323437 33326675 PCT