Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02098 ATGTCAGTTGCACCAGTTGAGAGTATCCCCTCATTAAGCAGCGATCTCTTCTATGATATATTTCGTCGAGTTGATGGTGCAACATTGGCTAGTGCAGCATGTACCTGTGCAGCATTGTGTTCCATCTCAAAAGAAGAGAGTTTGTGGGAGAACGTATGTTCATCTATGTGGCCTTCAACCAATAGAGAGGATGTCAAAAGTTTAATTTCTTCTGTTGGTGGATTCAGAAAGTTCTATGCAGATTGTTTTCCGCTTATTGTAAACAAGGAGGTCGTAGAGTATCAACAGAACAACTATCTTGAATATCTGGACAACTGGACTGAAGCTGAATATTATGGGGACATGAATGAATCTGAAAGCATCTCTCCATCAGATTTTGTTTCTATAGTAGATATTAGGTTCAAGGGGAAACCAATTTGTTCCAAAGTTCTCTGGGGAATTCCAAATGCAAATGGCTATGATGGTTGGTTCTATAACTGCCCTTTCCGGATTGATATTCTCACTTATGCAGATAGAGATGATAACAATGATGGAGTGGTTAACCTTTCTGTATCTGATGGTCTGCCTCCAATCGCATCCTTCGAGAGGGAAAGGAAAGACGGGAAACTGTGGCGGGAGCTTCGGGAAGGGCTCCAGCTCAGTTGGATTATAGTAAACAGGAAAATTAAACAAGCTGCAAATCTTGCTAGTTGGAGCCCTCTTGGTGGTCAAAGACATTGGCCAACAGATAAGGATTTTGTTATTCGCTTTGGATCAGTTCTACCTGCCAAGGAAATTCTTCCCTGTCAGGTAGTGGAATGTATCCTTATTATGAAGTTTAGAGTGGTTCACACAGAAGAAGACGGGGTTGAAACAACTCTTAAATTAACAGAGCTGAGCATGCAGTTGGAAGACATGGAAGGTGCCCATGTTAATGGAAGAAACAGTTTGCATATACTTAAGGAAGCACTTAGCAGCCGAAGGAGCAAAAATTATGGTGAAGTGCTTGAGTCTTGTCACATGTATTCAAAAGTACAGAATGAGTTGAAAGAGGAGAAGATGAGAAACGAAAGTAGGTTGGATAGACTTTGTATTTTAAGTGGCATTGCCGCGTTTATGACGTTCTGGTACTGCGTTTTGTGA 1122 0.4127 MSVAPVESIPSLSSDLFYDIFRRVDGATLASAACTCAALCSISKEESLWENVCSSMWPSTNREDVKSLISSVGGFRKFYADCFPLIVNKEVVEYQQNNYLEYLDNWTEAEYYGDMNESESISPSDFVSIVDIRFKGKPICSKVLWGIPNANGYDGWFYNCPFRIDILTYADRDDNNDGVVNLSVSDGLPPIASFERERKDGKLWRELREGLQLSWIIVNRKIKQAANLASWSPLGGQRHWPTDKDFVIRFGSVLPAKEILPCQVVECILIMKFRVVHTEEDGVETTLKLTELSMQLEDMEGAHVNGRNSLHILKEALSSRRSKNYGEVLESCHMYSKVQNELKEEKMRNESRLDRLCILSGIAAFMTFWYCVL 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02098 373 PANTHER F-BOX PROTEIN-RELATED 4 369 IPR045283 -
Cca03g02098 373 PANTHER F-BOX PROTEIN-RELATED 4 369 - -
Cca03g02098 373 Gene3D - 3 106 - -
Cca03g02098 373 SUPERFAMILY F-box domain 6 79 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02098 Cca-Chr3 41274168 41278032 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02098 - - gmx:100500689 725.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02098 03 41274168 41278032 Cca03g02098 03 41274168 41278032 ECH
Cca03g02098 03 41274168 41278032 Cca02g01470 02 33323437 33326675 PCT