Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02847 ATGGCCACCCTTTCCGAATGCACTTCCCCTCCTTGGccaaaccctaaccctaatcccactcccaactcaaacccaaaccctaaTTTCatccccgaccaatcccaaaccctcgacttcgactccctcatgcctccgcaacccgaatcgcttccgccccaccactcccccgccgctgcctcgccggaaccctccccgacgccgcctccgtcgctcctccacctctccttcaaccaggaccaggcctgcttcgccgcggccgccgacaacggcttccgcatctacgactgcaaccccttccgcgagctcttccgccgcgagttcgacgacggtggaatcggTCAAGTGGAGATGCTCTTCCGCTGCAACATTCTGGCCCTCGTCGGTGGGGGGTCCCACCCGCAGTACCCTCCCAACAAAGTCATGATCTGGGACGACCACCTGGGTCGCTGCATCGGCGAGCTTTCTTTCCGCGCCGCCGTGCGCGGCGTCAGGCTCCGCAGCGACAGGATTGTCGTTGTCGTGGAGCAGAAGATATTCGTGTACAACTTGGTGGACCTCAAACTGGTGCACCAGATTGAGACCTTTCTCAACCCTAAGGGGCTCTGCGCGGTTTCCCACTTGTCGGATTCTTTGGTTCTTGCGTGCCCGGGTTTGCACAAGGGTCAGATTCGCGTAGAGCACTACGCGCAGAAGAAGACCAAGTTCATTTCGGCGCATGATTCCAGAATCGCTTGCTTCGCCCTCACTCTTGATGGGCAGTTAATCGCCACCGCCAGCACCAAGGGCACGCTGATTCGGATTTTCGATACCGATCAAGGCACGCTTCTTCAAGAAGTGAGAAGGGGTGCGAATGCAGCAGAGATCTATAGTTTGGCATTCTCTTCTACTGCTCAGTGGCTGGCAGTCTCAAGTGACAAGGGTACTGTTCATGTATTCAGTCTCAAGGTTAATTCTAGCATCCCTCAGAATGAAAAGTCACAAAATTCATCCAATTCTGATGCTGCCGTTACCCCATCAAACTCATCTCGCTCCTTCATTAAATTTAAAGGAGTGCTGCCCAAGTATTTCAATTCTGAGTGGTCAGTTGCTCAGTTTCATTTACAAGAGGGCACTCAGTACACAGTTGCATTTGGTCAACAAAAGAATACAGTCATAATTCTTGGCATGGATGGAAGCTTCTATCGATGCCAATTTGATCCAGCACAAGGAGGGGAGATGACTAAGCTGGAATATCATAACATTTTAGAACCGGAACCAGAAACAGCCTTGTGA 1272 0.3852 MATLSECTSPPWPNPNPNPTPNSNPNPNFIPDQSQTLDFDSLMPPQPESLPPHHSPAAASPEPSPTPPPSLLHLSFNQDQACFAAAADNGFRIYDCNPFRELFRREFDDGGIGQVEMLFRCNILALVGGGSHPQYPPNKVMIWDDHLGRCIGELSFRAAVRGVRLRSDRIVVVVEQKIFVYNLVDLKLVHQIETFLNPKGLCAVSHLSDSLVLACPGLHKGQIRVEHYAQKKTKFISAHDSRIACFALTLDGQLIATASTKGTLIRIFDTDQGTLLQEVRRGANAAEIYSLAFSSTAQWLAVSSDKGTVHVFSLKVNSSIPQNEKSQNSSNSDAAVTPSNSSRSFIKFKGVLPKYFNSEWSVAQFHLQEGTQYTVAFGQQKNTVIILGMDGSFYRCQFDPAQGGEMTKLEYHNILEPEPETAL 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02847 423 PANTHER WD REPEAT PHOSPHOINOSITIDE-INTERACTING-LIKE PROTEIN 25 418 - -
Cca03g02847 423 MobiDBLite consensus disorder prediction 10 26 - -
Cca03g02847 423 MobiDBLite consensus disorder prediction 45 70 - -
Cca03g02847 423 Gene3D - 69 394 IPR015943 GO:0005515
Cca03g02847 423 SUPERFAMILY WD40 repeat-like 66 322 IPR036322 GO:0005515
Cca03g02847 423 MobiDBLite consensus disorder prediction 27 42 - -
Cca03g02847 423 MobiDBLite consensus disorder prediction 321 340 - -
Cca03g02847 423 MobiDBLite consensus disorder prediction 1 71 - -
Cca03g02847 423 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 25 418 - -
Cca03g02847 423 SMART WD40_4 229 269 IPR001680 GO:0005515
Cca03g02847 423 SMART WD40_4 43 95 IPR001680 GO:0005515
Cca03g02847 423 SMART WD40_4 272 313 IPR001680 GO:0005515
Cca03g02847 423 Pfam WD domain, G-beta repeat 282 312 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02847 Cca-Chr3 49791853 49795234 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02847 K22991 - gmx:100781692 701.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02847 03 49791853 49795234 Cca02g01470 02 33323437 33326675 ECH
Cca03g02847 03 49791853 49795234 Cca03g02847 03 49791853 49795234 ECH