Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01198 ATGGATAGAGTAAGGGAGTTGGCATCAAAGAAAGCAGCAGTTATATTTACAAAGAGTTCGTGTTACATGTGCCACAGCATCACGCAACTGTTCTATGAGCTTGGAGCAAGCCCTGCGGTGCATGAGCTAGACAAGGATGCATATGGGAGGGAAATGGAATGGGCCTTGAGGAGTATGGGGTGTAACCCTTCAGTGCCAGCAGTGTTCATTGGTGGGAAATTTGTAGGATCATCAAAGGATGTCATATCCCTCCATGTTGATGGCTCTCTCAAACAAATGCTCATGGATGCAAAGGCCATCTGGTTTTAG 309 0.4628 MDRVRELASKKAAVIFTKSSCYMCHSITQLFYELGASPAVHELDKDAYGREMEWALRSMGCNPSVPAVFIGGKFVGSSKDVISLHVDGSLKQMLMDAKAIWF 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01198 102 PANTHER GLUTAREDOXIN 1 101 IPR011905 -
Cca02g01198 102 ProSiteProfiles Glutaredoxin domain profile. 1 101 - -
Cca02g01198 102 Gene3D Glutaredoxin 1 101 - -
Cca02g01198 102 Pfam Glutaredoxin 14 75 IPR002109 -
Cca02g01198 102 SUPERFAMILY Thioredoxin-like 1 101 IPR036249 -
Cca02g01198 102 PRINTS Glutaredoxin signature 13 31 IPR014025 -
Cca02g01198 102 PRINTS Glutaredoxin signature 58 71 IPR014025 -
Cca02g01198 102 PRINTS Glutaredoxin signature 72 85 IPR014025 -
Cca02g01198 102 PANTHER GLUTAREDOXIN-C1 PROTEIN 1 101 - -
Cca02g01198 102 CDD GRX_GRXh_1_2_like 12 93 - -
Cca02g01198 102 TIGRFAM GlrX-like_plant: glutaredoxin-like family 4 101 IPR011905 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01198 Cca-Chr2 29646937 29647785 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01198 1 102 Miscellaneous Gene Families AT4G15700 47.059 3.54e-34 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01198 K03676 - gmx:100305876 206.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01198 02 29646937 29647785 Cca02g01198 02 29646937 29647785 ECH
Cca03g02664 03 47951167 47951472 Cca02g01198 02 29646937 29647785 PCT
Cca02g01198 02 29646937 29647785 Cca03g02665 03 47951515 47954153 PCT