Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01143 ATGGAATCAACATCAACTCATGTAATATCCATTACGAATGGAGAAGAGAATATTGCTCCAAGGAAGAATAATAAAACAAAAACATTCCATTTTTCTATTTCATTTCCACCCGTTTTTTCCCGTCTTAGAGAAAACAAAATCCACTTCTCTCTTTTCTCCATCGGTTCCAATCTCAGGAATAAGCAAAAGAAAGACACTAAAAGAATTATCCACAGCATCAAAGTTGGGATCTCCCTTGTTTTGATTTCACTTCTGTATCTCTTGGAACCTCTCTATGAGCTAGTTGGAGAAAATGCTATATGGGCTATCATGACTGTTGTCGTCACCTTTGAATTTTCAGCAGGTGCTACGCTAGGAAAAGGTTTAAATCGTGGAATGGGAACTGTATTAGGAGGTGGACTTGGTATCATGGCCGCAGTTTTGGCACAAAAACTTGGTGGGGTAGTTGCCAACCCGATTATCATTGGTGCTTCTGTATTTTTCTTTGGAACAATTGCGACATATTTTCGATTATTCCCAAGCGTCAAAAAGAGATACGATTACGGAGTGATGATTTTGATCCTCACTTTTAATTTGGTTGTGGTGTCCGGTGTGCGCACTGAAGATCAGAAAGTTTGGGAAATAGCACGTGATCGTCTTTTAACAATTGTCATGGGTTTCGTTGTGTGCATTAGTGTGAGCTTGTTGGTCTTCCCCTTGTGGGCCAGCGATGAACTTCATGATTCCATTGTCACTAGATTCCAAGGCCTTGCCCATTCATTACAAGTTTGCTTGGAGGAATATGTCAAATTTGGTACTGAAAAAGAAAATAAGCCTGCTGCTAACTTCACTATTTGCAAGTCGTTGTTGGACTCCAAATCAAAGGATGAGTTACTGGCAAATTTCGCAAAATGGGAACCCTGGCACGGAAAATTTGGATTTTTCTACCCTTGGGAGAAATACCTAAAGATGGGAGAGGTTCTTGGAGAACTTGCAGCTATTATTCTTGCTGTAGGAGGTTGCCTCCAAGACTCAACTACGGTAGGTATATAA 1032 0.4031 MESTSTHVISITNGEENIAPRKNNKTKTFHFSISFPPVFSRLRENKIHFSLFSIGSNLRNKQKKDTKRIIHSIKVGISLVLISLLYLLEPLYELVGENAIWAIMTVVVTFEFSAGATLGKGLNRGMGTVLGGGLGIMAAVLAQKLGGVVANPIIIGASVFFFGTIATYFRLFPSVKKRYDYGVMILILTFNLVVVSGVRTEDQKVWEIARDRLLTIVMGFVVCISVSLLVFPLWASDELHDSIVTRFQGLAHSLQVCLEEYVKFGTEKENKPAANFTICKSLLDSKSKDELLANFAKWEPWHGKFGFFYPWEKYLKMGEVLGELAAIILAVGGCLQDSTTVGI 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01143 343 Pfam Aluminium activated malate transporter 62 338 IPR020966 GO:0015743
Cca02g01143 343 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 12-LIKE 6 340 - -
Cca02g01143 343 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 10 6 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01143 Cca-Chr2 28878070 28881816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g01143 54 336 Miscellaneous Gene Families AT4G17970 46.690 4.08e-84 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01143 - - gmx:100527892 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01143 02 28878070 28881816 Cca02g01143 02 28878070 28881816 ECH
Cca03g02101 03 41294569 41297746 Cca02g01143 02 28878070 28881816 PCT
Cca03g02585 03 47167142 47169425 Cca02g01143 02 28878070 28881816 PCT