Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02585 ATGGATATTGAGTCAACAGCGCAAGCAAACAAGGGTGGATTTTTTTCTCAATGGGGGAACTACCTCAAGGCTTTGCCTAGTAGCTTCAAGTCCAAGGTCATCAACTTCACGAGGAGCATTAAAAAGATAGGGCAAGATGACCCCAGACGAGTAATTCACTCATTAAAAGTGGCCATTGCTCTCACATTGGTGTCCTTGGTTTACTACTCGAGGCCTCTTTATGATGGCTTTGGAGTTGCAGGAATGTGGGCTGTTCTTACAGTGGTGGTAGTATTTGAATTCAGTGTAGGTGCAACTCTCTACAAAAGTTTAAATAGAGTATGTGGTACATTATTAGCTGGTGCTTTAGGGGTTGGAGGGCAACACTTAGCTACTGCTTTTGGAGAAAGAGCAGAACCTGTTGTCCTTGGGATCCTTGTCTTCATTCTAGCCGCAGGAGCTACTTTTTTCAGATTTTTTCCAAAGATCAAGGCAAGATATGACTATGGAGTGATGATATTTATATTGACATTCTGTTTAGTTACTGTCTCGGGGTACAGAGTGGAAGAACTCTTCGAGCTTGCTCATCAGAGACTTTCAACAATTTTAATAGGGGGAGCAGCATGCATCGTCATCTCCATTTTCATTTGTCCAGTTTGGGCAGGTGAAGATCTTCACAAGTTGGTAGTTTCTAATATAGAAAAGCTAGCAAATTACCTTCAAGGGTTTGAAGTCGAATATTTTCATTGCTCGGAGGATAAAGAAAAATGTGAGAAGTCAGTTCTCGAAGGATATAAAAGTGTTCTCAATTCCAAAGCAAGTGAGGAGTCCTTGGCAAATTTGGCAAGGTGGGAACCAGGACATGGCCGTTTTGGTCTTCGCCATCCTTGGAAGCAGTACTTGAAGATTGGAGCACTTACTCGGGAATGTGCTTACAAGATTGAAACCCTTAACAACTACCTTAACCCGGAAATCCAAGCATCTTTGGAATTCAAGTGTAAAGTTCAAGAACCATGCACGAAGATGTGTTCCGAGTCCAACAAGGCGTTGAAGGCAATATCATCGTCAATAAAAACAATGACAGACCCATCAGGTGCCAAAAGCCACATAGAAAATTCAAAAACCGCAGTTGAAGACCTCAAAGTTGCACTGGAAATGGTTTCTTTGGACGATACTGAACTCTTAGCCATAGTCCCAGTTGCCACAGTTGCATCAATACTCGAAGAAATCACCAAGTCAGTGGAGAAAATATATGAGTCTGTTTCTGAGCTTTCTGAGTTAGCACATTTCCAGAGTGTCATTGAACCCAATGTCTCACCAGAGAAGCCAACATTACTTCATCGAGGAATCATAAAACCTGTTGTGGATATTGATAACACCGTCGACCATGTTGAAATCACGATCCCAGAGATAACTACAGACTCGCCAGAAAAACAAAATGCAACACCAAAACCCTCTGAACATATGTAA 1449 0.4189 MDIESTAQANKGGFFSQWGNYLKALPSSFKSKVINFTRSIKKIGQDDPRRVIHSLKVAIALTLVSLVYYSRPLYDGFGVAGMWAVLTVVVVFEFSVGATLYKSLNRVCGTLLAGALGVGGQHLATAFGERAEPVVLGILVFILAAGATFFRFFPKIKARYDYGVMIFILTFCLVTVSGYRVEELFELAHQRLSTILIGGAACIVISIFICPVWAGEDLHKLVVSNIEKLANYLQGFEVEYFHCSEDKEKCEKSVLEGYKSVLNSKASEESLANLARWEPGHGRFGLRHPWKQYLKIGALTRECAYKIETLNNYLNPEIQASLEFKCKVQEPCTKMCSESNKALKAISSSIKTMTDPSGAKSHIENSKTAVEDLKVALEMVSLDDTELLAIVPVATVASILEEITKSVEKIYESVSELSELAHFQSVIEPNVSPEKPTLLHRGIIKPVVDIDNTVDHVEITIPEITTDSPEKQNATPKPSEHM 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02585 482 MobiDBLite consensus disorder prediction 463 482 - -
Cca03g02585 482 Pfam Aluminium activated malate transporter 42 418 IPR020966 GO:0015743
Cca03g02585 482 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 8 1 438 - -
Cca03g02585 482 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 10 1 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02585 Cca-Chr3 47167142 47169425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02585 1 463 Miscellaneous Gene Families AT3G11680 56.660 3.41e-178 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02585 - - gmx:100170704 829.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02585 03 47167142 47169425 Cca03g02585 03 47167142 47169425 ECH
Cca03g02585 03 47167142 47169425 Cca02g01143 02 28878070 28881816 PCT