Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g01066 ATGTCGTTCACTAACACCTCATCACATTCCTCTCGTTACAGCCCAATCCCTTCCACCTCCACTCCTCCCTCACGCGCCGCCACTCCCTCCGGCTTCCCAACGCGCCGCCCATGGGAGGAGGTCTTCGCGCTCCACTCCTTCACGCGCCCCTACTCCCTCGGCGAAGCAACGCTCCGAGTGAAGCGCAACCTCGGCCACTTCCGCGTGAACTACGCCATGATCGTTCTCTTCGTCCTCTTCCTCAGCCTCCTCTGGCGCCCTATCTCCCTCATCGTGTTCCTCGCCGTCTTCGTCGCGTGGTTCTTCCTCTACTTCTTCCGCGACGGCCCCGTGGTCCTGCTCCGCCGCACGCTCGACGACCGCCTCGTCCTTGCCGTGCTCACCGCCGTCACTGTGGCCGCGCTCGTCCTCGCCGGCGCCTGGCTGAACGTGGTGGTGTCGGTGCTCATTGCGGCAGCGGCGGTGGCGTTGCATGCTGTTTTTCGGAGCACCGAGGATTTGTACGTGGATGAATTGGAAGTCTCCGATGGAGGATTGCTTTCGGTTGTTGGTGGAAGCCCTACGAAACGAACGGGAAATAGTAATTCATACAAACCGAATGAAAATAGTAGGAAAAGACAATCTAAATTGAAATGTCAAATATCCAAGAAACCATTTGTCGCAACTAGCTTGAAAACAAAAGGCATGCTCTCGAAAAATCAGAAACCAATGATCACTACAATGACCAGCAGAACAGCATGCTACTCTACATTTAACAGACTACCAGGAGACGAGATTTCTTCAATTTATTCAACCTATCTTATCCTTCATAACATCGCGGCTATTGGCAACTCAGTGACAGAAGAATTCTTGTTGAATATACATGCTGATGACTGA 876 0.5331 MSFTNTSSHSSRYSPIPSTSTPPSRAATPSGFPTRRPWEEVFALHSFTRPYSLGEATLRVKRNLGHFRVNYAMIVLFVLFLSLLWRPISLIVFLAVFVAWFFLYFFRDGPVVLLRRTLDDRLVLAVLTAVTVAALVLAGAWLNVVVSVLIAAAAVALHAVFRSTEDLYVDELEVSDGGLLSVVGGSPTKRTGNSNSYKPNENSRKRQSKLKCQISKKPFVATSLKTKGMLSKNQKPMITTMTSRTACYSTFNRLPGDEISSIYSTYLILHNIAAIGNSVTEEFLLNIHADD 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g01066 291 Pfam PRA1 family protein 32 171 IPR004895 -
Cca02g01066 291 PANTHER PRA1 FAMILY PROTEIN 23 188 - -
Cca02g01066 291 PANTHER PRENYLATED RAB ACCEPTOR 1-RELATED 23 188 IPR004895 -
Cca02g01066 291 MobiDBLite consensus disorder prediction 186 201 - -
Cca02g01066 291 MobiDBLite consensus disorder prediction 1 32 - -
Cca02g01066 291 MobiDBLite consensus disorder prediction 1 28 - -
Cca02g01066 291 MobiDBLite consensus disorder prediction 183 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g01066 Cca-Chr2 27619104 27624885 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g01066 K20359 - gmx:100815700 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g01066 02 27619104 27624885 Cca02g01575 02 34426657 34427238 ECH
Cca02g01066 02 27619104 27624885 Cca02g01066 02 27619104 27624885 ECH
Cca03g02175 03 42363276 42364166 Cca02g01066 02 27619104 27624885 PCT