Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02175 atgtcctcttacagctccctcccctcgccctcctcctcctcctccgccGTCACGCGCCCACACACCTCCCCACGCGCCTCCTTCGCCACGCGCCGCCCCTGGGAAGAGGTGTTCGCGCTCTACTCCTTCACGCGCCCCTACTCGGTGGGCGAGGCCGCCATGCGCGTGAGGCGCAACCTCGACCACTTCCGCGTCAACTACTTCATGATGGCGCTGTTCGTCTTGTTCCTCAGCCTGCTCTGGCACCCCCTCTCCATCATCGTCTACTTGGCGGCGCTGGCCGCCTGGTTCTTCCTCTACTTCTTCCGGGATGAGCCCCTCGTGCTGCTCGGCGCCGCGCTCCACGACCGGGCCCTTGCGGCCAcgctggcggcggccactgtgctggcgctggcgctCACCGGGGTCTGGGAGAACGTGGTGGCTGCGGTGGTCCTGGCGGTTGTAATTGTTGCGTTGCACGCTGCGTTTAGGAGCACGGAAGATTTGTACGTGGATGAGCACGACGGTGGGTTGATTTCGGTGGTGGGGGGTACCCCGACCAAACGAACAGGGTACACCACCCTAGTATTATAG 576 0.5469 MSSYSSLPSPSSSSSAVTRPHTSPRASFATRRPWEEVFALYSFTRPYSVGEAAMRVRRNLDHFRVNYFMMALFVLFLSLLWHPLSIIVYLAALAAWFFLYFFRDEPLVLLGAALHDRALAATLAAATVLALALTGVWENVVAAVVLAVVIVALHAAFRSTEDLYVDEHDGGLISVVGGTPTKRTGYTTLVL 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02175 191 MobiDBLite consensus disorder prediction 1 24 - -
Cca03g02175 191 Pfam PRA1 family protein 27 167 IPR004895 -
Cca03g02175 191 PANTHER PRENYLATED RAB ACCEPTOR 1-RELATED 7 186 IPR004895 -
Cca03g02175 191 PANTHER PRA1 FAMILY PROTEIN 7 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02175 Cca-Chr3 42363276 42364166 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02175 K20359 - gmx:100816074 250.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02175 03 42363276 42364166 Cca02g01066 02 27619104 27624885 PCT