Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g00439 ATGGGGTTATATGAGCATTCAGACGTTGTGCAGTGGGGTATTAATCTTTTTGACAGTGACCCTGCTTATAGTCCTGGATACTATGGTGACATAATTCAACATGATACGGGTGATGTCTATAATGGACATTACTTCCATAGCCATTATGATCCTGAGCGGAACCAAATAGAGAATGATGAGATCATTGCACGGGCTCTTCAAGAAGAGTTTTCACGGCTAGACATTAATGAGTGTTCAAGATATTCACAGACAGATGAAGAACAGTTCCGTGCTTCTGAGCCTGCATATAATTGGCACAACACATCAATGATGAACTATTGTTCAGGAGGTCATGATTATGCCTATGATGGAGTTGGTGAGTTAGAACCTTCTAGTTCATCGTGTTGTAGTCCTTCTGAAGCAGAGGAATGCTCCTTGGAGCTTACCGACAATTATCCACTTGATGATGAAATAGGGAGGAGATTGAGCCAGATGGTTCCAATTCCTCATGTTCCAAAAATTAATGGAGAAATTCCTTCAATTGATGAAGCAAGTTCAGATCATCAAAGGCTTCTGGATAGATTGCAGTTATATGACTTTGTGGAGCATATGGTGCAAGGTGATGGTAATTGTCAGTTCCGTGCATTGTCTGATCAATTGTATAACACACCTGATCACCACAAGTATGTGAGACGACAAGTTGTGAACCAGCTGAAGTCTCATCCAGAGATTTATGAGGGATATGTTCCCATGGAATATAGCGAATATTTGGAGAAGATGTCTAAGAGTGGTGAATGGGGGGATCATGTTACTCTTCAAGCAGCTGCAGATTCGTATGGTGTAAGAATATTTGTGATGACTTCTTTCAAGGACACCTGTTGCATAGAGATTATTCCTCATTTTGAGAAGCCAAAAGGAGTGATTTTCCTTAGTTTTTGGGCAGAGGTGCATTACAACTCCATCTATCCTCAAGGAGATATACCTTCAAATGAGTCGAGAAAGAAGAAAAGGTGGTGGAACTTTGGGACTAAGCATTAA 1017 0.4071 MGLYEHSDVVQWGINLFDSDPAYSPGYYGDIIQHDTGDVYNGHYFHSHYDPERNQIENDEIIARALQEEFSRLDINECSRYSQTDEEQFRASEPAYNWHNTSMMNYCSGGHDYAYDGVGELEPSSSSCCSPSEAEECSLELTDNYPLDDEIGRRLSQMVPIPHVPKINGEIPSIDEASSDHQRLLDRLQLYDFVEHMVQGDGNCQFRALSDQLYNTPDHHKYVRRQVVNQLKSHPEIYEGYVPMEYSEYLEKMSKSGEWGDHVTLQAAADSYGVRIFVMTSFKDTCCIEIIPHFEKPKGVIFLSFWAEVHYNSIYPQGDIPSNESRKKKRWWNFGTKH 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g00439 338 Pfam OTU-like cysteine protease 199 285 IPR003323 -
Cca02g00439 338 SUPERFAMILY Cysteine proteinases 179 317 IPR038765 -
Cca02g00439 338 Gene3D - 174 321 - -
Cca02g00439 338 PANTHER OTU DOMAIN CONTAINING PROTEIN 25 334 - -
Cca02g00439 338 PANTHER CYSTEINE PROTEINASE SUPERFAMILY PROTEIN 25 334 - -
Cca02g00439 338 ProSiteProfiles OTU domain profile. 193 317 IPR003323 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g00439 Cca-Chr2 9247901 9254498 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g00439 - - gmx:100811851 650.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00439 02 9247901 9254498 Cca02g02008 02 39940937 39947739 ECH
Cca02g00439 02 9247901 9254498 Cca02g00439 02 9247901 9254498 ECH
Cca03g02385 03 44909529 44915164 Cca02g00439 02 9247901 9254498 PCT